Strain Fitness in Escherichia coli ECOR38 around HEPCGN_00805

Experiment: TP7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntcitT and citG are separated by 49 nucleotidescitG and citX overlap by 26 nucleotidescitX and citF are separated by 3 nucleotides HEPCGN_00800: citT - citrate/succinate antiporter CitT, at 88,719 to 90,182 citT HEPCGN_00805: citG - triphosphoribosyl-dephospho-CoA synthase CitG, at 90,232 to 91,110 citG HEPCGN_00810: citX - Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase, at 91,085 to 91,636 citX HEPCGN_00815: citF - citrate lyase subunit alpha, at 91,640 to 93,172 citF Position (kb) 90 91 92Strain fitness (log2 ratio) -2 -1 0 1 2at 89.252 kb on + strand, within citTat 89.259 kb on - strand, within citTat 89.259 kb on - strand, within citTat 89.302 kb on - strand, within citTat 89.353 kb on - strand, within citTat 89.407 kb on + strand, within citTat 89.417 kb on - strand, within citTat 89.490 kb on - strand, within citTat 89.582 kb on + strand, within citTat 89.583 kb on - strand, within citTat 89.583 kb on - strand, within citTat 89.583 kb on - strand, within citTat 89.717 kb on + strand, within citTat 89.818 kb on - strand, within citTat 89.818 kb on - strand, within citTat 89.838 kb on + strand, within citTat 89.838 kb on + strand, within citTat 89.928 kb on - strand, within citTat 89.928 kb on - strand, within citTat 89.968 kb on + strand, within citTat 89.968 kb on + strand, within citTat 89.973 kb on - strand, within citTat 89.990 kb on + strand, within citTat 89.991 kb on - strand, within citTat 89.993 kb on + strand, within citTat 89.993 kb on + strand, within citTat 90.105 kb on + strandat 90.160 kb on - strandat 90.162 kb on - strandat 90.162 kb on - strandat 90.201 kb on - strandat 90.255 kb on + strandat 90.304 kb on - strandat 90.367 kb on + strand, within citGat 90.494 kb on - strand, within citGat 90.636 kb on + strand, within citGat 90.774 kb on + strand, within citGat 90.808 kb on - strand, within citGat 90.954 kb on + strand, within citGat 90.975 kb on + strand, within citGat 90.976 kb on - strand, within citGat 91.049 kb on + strandat 91.049 kb on + strandat 91.139 kb on + strandat 91.297 kb on + strand, within citXat 91.298 kb on - strand, within citXat 91.641 kb on + strandat 92.006 kb on + strand, within citFat 92.069 kb on + strand, within citF

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction TP7
remove
89,252 + citT HEPCGN_00800 0.36 +0.6
89,259 - citT HEPCGN_00800 0.37 +0.2
89,259 - citT HEPCGN_00800 0.37 -1.6
89,302 - citT HEPCGN_00800 0.40 -0.3
89,353 - citT HEPCGN_00800 0.43 -1.1
89,407 + citT HEPCGN_00800 0.47 +0.6
89,417 - citT HEPCGN_00800 0.48 -1.1
89,490 - citT HEPCGN_00800 0.53 -0.7
89,582 + citT HEPCGN_00800 0.59 -2.6
89,583 - citT HEPCGN_00800 0.59 -0.2
89,583 - citT HEPCGN_00800 0.59 +0.4
89,583 - citT HEPCGN_00800 0.59 +0.5
89,717 + citT HEPCGN_00800 0.68 -1.6
89,818 - citT HEPCGN_00800 0.75 -0.3
89,818 - citT HEPCGN_00800 0.75 +1.3
89,838 + citT HEPCGN_00800 0.76 -1.4
89,838 + citT HEPCGN_00800 0.76 -2.3
89,928 - citT HEPCGN_00800 0.83 -0.5
89,928 - citT HEPCGN_00800 0.83 +0.5
89,968 + citT HEPCGN_00800 0.85 -0.7
89,968 + citT HEPCGN_00800 0.85 -0.6
89,973 - citT HEPCGN_00800 0.86 +0.1
89,990 + citT HEPCGN_00800 0.87 -0.8
89,991 - citT HEPCGN_00800 0.87 -1.2
89,993 + citT HEPCGN_00800 0.87 -0.3
89,993 + citT HEPCGN_00800 0.87 +0.2
90,105 + -0.8
90,160 - +0.8
90,162 - +0.4
90,162 - -0.2
90,201 - -0.0
90,255 + -0.4
90,304 - -2.5
90,367 + citG HEPCGN_00805 0.15 +0.2
90,494 - citG HEPCGN_00805 0.30 -1.4
90,636 + citG HEPCGN_00805 0.46 +2.0
90,774 + citG HEPCGN_00805 0.62 -1.7
90,808 - citG HEPCGN_00805 0.66 -0.7
90,954 + citG HEPCGN_00805 0.82 -0.6
90,975 + citG HEPCGN_00805 0.85 +0.8
90,976 - citG HEPCGN_00805 0.85 -2.1
91,049 + +0.6
91,049 + -0.5
91,139 + -0.1
91,297 + citX HEPCGN_00810 0.38 +2.1
91,298 - citX HEPCGN_00810 0.39 -1.3
91,641 + +0.5
92,006 + citF HEPCGN_00815 0.24 -0.1
92,069 + citF HEPCGN_00815 0.28 +0.4

Or see this region's nucleotide sequence