Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS20960

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS20955 and ABI39_RS20960 are separated by 381 nucleotidesABI39_RS20960 and ABI39_RS20965 are separated by 125 nucleotidesABI39_RS20965 and ABI39_RS20970 are separated by 211 nucleotides ABI39_RS20955: ABI39_RS20955 - OmpA family protein, at 5,158,636 to 5,159,709 _RS20955 ABI39_RS20960: ABI39_RS20960 - PCMD domain-containing protein, at 5,160,091 to 5,161,050 _RS20960 ABI39_RS20965: ABI39_RS20965 - SPOR domain-containing protein, at 5,161,176 to 5,161,673 _RS20965 ABI39_RS20970: ABI39_RS20970 - YtxH domain-containing protein, at 5,161,885 to 5,162,082 _RS20970 Position (kb) 5160 5161 5162Strain fitness (log2 ratio) -2 -1 0 1at 5159.109 kb on + strand, within ABI39_RS20955at 5159.110 kb on - strand, within ABI39_RS20955at 5159.226 kb on + strand, within ABI39_RS20955at 5159.267 kb on - strand, within ABI39_RS20955at 5159.293 kb on - strand, within ABI39_RS20955at 5159.364 kb on + strand, within ABI39_RS20955at 5159.488 kb on - strand, within ABI39_RS20955at 5159.500 kb on - strand, within ABI39_RS20955at 5159.674 kb on + strandat 5159.691 kb on + strandat 5159.702 kb on + strandat 5159.804 kb on + strandat 5159.805 kb on - strandat 5159.821 kb on + strandat 5159.828 kb on + strandat 5159.830 kb on + strandat 5159.877 kb on + strandat 5159.880 kb on + strandat 5159.931 kb on + strandat 5159.936 kb on - strandat 5159.936 kb on - strandat 5159.936 kb on - strandat 5159.951 kb on + strandat 5160.018 kb on + strandat 5160.033 kb on + strandat 5160.048 kb on + strandat 5160.051 kb on + strandat 5160.051 kb on + strandat 5160.051 kb on + strandat 5160.054 kb on - strandat 5160.055 kb on + strandat 5160.084 kb on - strandat 5160.258 kb on + strand, within ABI39_RS20960at 5160.335 kb on + strand, within ABI39_RS20960at 5160.350 kb on - strand, within ABI39_RS20960at 5160.387 kb on + strand, within ABI39_RS20960at 5160.387 kb on + strand, within ABI39_RS20960at 5160.388 kb on - strand, within ABI39_RS20960at 5160.408 kb on + strand, within ABI39_RS20960at 5160.432 kb on + strand, within ABI39_RS20960at 5160.539 kb on - strand, within ABI39_RS20960at 5160.539 kb on - strand, within ABI39_RS20960at 5160.546 kb on - strand, within ABI39_RS20960at 5160.627 kb on + strand, within ABI39_RS20960at 5160.640 kb on - strand, within ABI39_RS20960at 5160.676 kb on - strand, within ABI39_RS20960at 5160.777 kb on + strand, within ABI39_RS20960at 5160.807 kb on + strand, within ABI39_RS20960at 5160.870 kb on + strand, within ABI39_RS20960at 5160.870 kb on + strand, within ABI39_RS20960at 5160.871 kb on - strand, within ABI39_RS20960at 5160.896 kb on + strand, within ABI39_RS20960at 5160.952 kb on - strand, within ABI39_RS20960at 5160.965 kb on - strandat 5161.006 kb on + strandat 5161.044 kb on - strandat 5161.044 kb on - strandat 5161.088 kb on + strandat 5161.177 kb on + strandat 5161.181 kb on - strandat 5161.181 kb on - strandat 5161.181 kb on - strandat 5161.187 kb on + strandat 5161.187 kb on + strandat 5161.189 kb on + strandat 5161.189 kb on + strandat 5161.191 kb on + strandat 5161.407 kb on + strand, within ABI39_RS20965at 5161.407 kb on + strand, within ABI39_RS20965at 5161.500 kb on + strand, within ABI39_RS20965at 5161.719 kb on - strandat 5161.721 kb on - strandat 5161.904 kb on + strandat 5161.948 kb on - strand, within ABI39_RS20970at 5162.004 kb on - strand, within ABI39_RS20970

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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5,159,109 + ABI39_RS20955 0.44 +0.1
5,159,110 - ABI39_RS20955 0.44 -0.3
5,159,226 + ABI39_RS20955 0.55 +0.4
5,159,267 - ABI39_RS20955 0.59 +0.1
5,159,293 - ABI39_RS20955 0.61 +0.7
5,159,364 + ABI39_RS20955 0.68 +0.5
5,159,488 - ABI39_RS20955 0.79 +0.1
5,159,500 - ABI39_RS20955 0.80 +0.3
5,159,674 + +0.3
5,159,691 + +0.7
5,159,702 + +0.1
5,159,804 + -0.3
5,159,805 - +0.2
5,159,821 + -0.2
5,159,828 + -0.2
5,159,830 + +0.0
5,159,877 + +0.3
5,159,880 + +0.3
5,159,931 + -0.2
5,159,936 - +0.2
5,159,936 - -0.1
5,159,936 - -0.1
5,159,951 + -0.3
5,160,018 + +0.7
5,160,033 + -1.2
5,160,048 + -0.6
5,160,051 + +0.9
5,160,051 + -0.1
5,160,051 + -0.1
5,160,054 - -0.8
5,160,055 + -0.0
5,160,084 - -0.3
5,160,258 + ABI39_RS20960 0.17 -0.1
5,160,335 + ABI39_RS20960 0.25 -0.3
5,160,350 - ABI39_RS20960 0.27 -0.1
5,160,387 + ABI39_RS20960 0.31 -0.4
5,160,387 + ABI39_RS20960 0.31 -2.0
5,160,388 - ABI39_RS20960 0.31 -0.9
5,160,408 + ABI39_RS20960 0.33 +0.5
5,160,432 + ABI39_RS20960 0.36 +0.9
5,160,539 - ABI39_RS20960 0.47 -0.6
5,160,539 - ABI39_RS20960 0.47 -0.6
5,160,546 - ABI39_RS20960 0.47 -0.3
5,160,627 + ABI39_RS20960 0.56 -0.0
5,160,640 - ABI39_RS20960 0.57 +0.1
5,160,676 - ABI39_RS20960 0.61 -1.7
5,160,777 + ABI39_RS20960 0.71 -0.5
5,160,807 + ABI39_RS20960 0.75 +0.2
5,160,870 + ABI39_RS20960 0.81 -0.6
5,160,870 + ABI39_RS20960 0.81 +0.0
5,160,871 - ABI39_RS20960 0.81 +0.0
5,160,896 + ABI39_RS20960 0.84 +0.4
5,160,952 - ABI39_RS20960 0.90 -0.0
5,160,965 - +0.3
5,161,006 + -1.1
5,161,044 - -0.3
5,161,044 - +1.0
5,161,088 + -0.0
5,161,177 + -0.3
5,161,181 - -0.3
5,161,181 - +0.3
5,161,181 - +0.9
5,161,187 + +0.5
5,161,187 + -0.3
5,161,189 + -0.4
5,161,189 + -1.8
5,161,191 + -0.3
5,161,407 + ABI39_RS20965 0.46 -1.4
5,161,407 + ABI39_RS20965 0.46 -1.4
5,161,500 + ABI39_RS20965 0.65 +0.8
5,161,719 - +0.6
5,161,721 - +0.5
5,161,904 + -0.5
5,161,948 - ABI39_RS20970 0.32 -0.2
5,162,004 - ABI39_RS20970 0.60 -0.1

Or see this region's nucleotide sequence