Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06925

Experiment: a-Cyclodextrin (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABI39_RS06915 and ABI39_RS06920 are separated by 26 nucleotidesABI39_RS06920 and ABI39_RS06925 overlap by 8 nucleotidesABI39_RS06925 and ABI39_RS06930 are separated by 12 nucleotides ABI39_RS06915: ABI39_RS06915 - YfhO family protein, at 1,916,313 to 1,918,805 _RS06915 ABI39_RS06920: ABI39_RS06920 - glycosyltransferase, at 1,918,832 to 1,919,578 _RS06920 ABI39_RS06925: ABI39_RS06925 - glycosyltransferase, at 1,919,571 to 1,920,833 _RS06925 ABI39_RS06930: ABI39_RS06930 - glycosyltransferase family 4 protein, at 1,920,846 to 1,921,961 _RS06930 Position (kb) 1919 1920 1921Strain fitness (log2 ratio) -2 -1 0 1at 1918.909 kb on + strand, within ABI39_RS06920at 1918.982 kb on - strand, within ABI39_RS06920at 1919.202 kb on - strand, within ABI39_RS06920at 1919.255 kb on + strand, within ABI39_RS06920at 1919.316 kb on + strand, within ABI39_RS06920at 1919.455 kb on + strand, within ABI39_RS06920at 1919.475 kb on + strand, within ABI39_RS06920at 1919.498 kb on + strand, within ABI39_RS06920at 1919.499 kb on - strand, within ABI39_RS06920at 1919.600 kb on - strandat 1919.684 kb on - strandat 1919.850 kb on + strand, within ABI39_RS06925at 1919.851 kb on - strand, within ABI39_RS06925at 1919.863 kb on - strand, within ABI39_RS06925at 1919.879 kb on - strand, within ABI39_RS06925at 1919.881 kb on - strand, within ABI39_RS06925at 1919.896 kb on + strand, within ABI39_RS06925at 1919.896 kb on + strand, within ABI39_RS06925at 1919.905 kb on - strand, within ABI39_RS06925at 1919.905 kb on - strand, within ABI39_RS06925at 1919.929 kb on + strand, within ABI39_RS06925at 1919.941 kb on + strand, within ABI39_RS06925at 1919.968 kb on + strand, within ABI39_RS06925at 1919.969 kb on - strand, within ABI39_RS06925at 1920.014 kb on + strand, within ABI39_RS06925at 1920.271 kb on - strand, within ABI39_RS06925at 1920.386 kb on - strand, within ABI39_RS06925at 1920.406 kb on + strand, within ABI39_RS06925at 1920.434 kb on + strand, within ABI39_RS06925at 1920.504 kb on - strand, within ABI39_RS06925at 1920.504 kb on - strand, within ABI39_RS06925at 1920.558 kb on + strand, within ABI39_RS06925at 1920.558 kb on + strand, within ABI39_RS06925at 1920.567 kb on - strand, within ABI39_RS06925at 1920.605 kb on + strand, within ABI39_RS06925at 1920.606 kb on - strand, within ABI39_RS06925at 1920.685 kb on - strand, within ABI39_RS06925at 1920.700 kb on - strand, within ABI39_RS06925at 1920.822 kb on - strandat 1920.883 kb on - strandat 1921.092 kb on - strand, within ABI39_RS06930at 1921.131 kb on + strand, within ABI39_RS06930at 1921.245 kb on + strand, within ABI39_RS06930at 1921.246 kb on - strand, within ABI39_RS06930at 1921.372 kb on - strand, within ABI39_RS06930at 1921.568 kb on - strand, within ABI39_RS06930at 1921.594 kb on - strand, within ABI39_RS06930at 1921.677 kb on - strand, within ABI39_RS06930at 1921.680 kb on + strand, within ABI39_RS06930at 1921.681 kb on - strand, within ABI39_RS06930at 1921.703 kb on + strand, within ABI39_RS06930at 1921.714 kb on - strand, within ABI39_RS06930at 1921.771 kb on - strand, within ABI39_RS06930at 1921.793 kb on - strand, within ABI39_RS06930at 1921.797 kb on - strand, within ABI39_RS06930

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Cyclodextrin (C)
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1,918,909 + ABI39_RS06920 0.10 -2.4
1,918,982 - ABI39_RS06920 0.20 -2.7
1,919,202 - ABI39_RS06920 0.50 +0.0
1,919,255 + ABI39_RS06920 0.57 -2.1
1,919,316 + ABI39_RS06920 0.65 -2.1
1,919,455 + ABI39_RS06920 0.83 -1.8
1,919,475 + ABI39_RS06920 0.86 -1.6
1,919,498 + ABI39_RS06920 0.89 -1.1
1,919,499 - ABI39_RS06920 0.89 -2.0
1,919,600 - +0.1
1,919,684 - -0.4
1,919,850 + ABI39_RS06925 0.22 -1.4
1,919,851 - ABI39_RS06925 0.22 -0.9
1,919,863 - ABI39_RS06925 0.23 -0.8
1,919,879 - ABI39_RS06925 0.24 +0.6
1,919,881 - ABI39_RS06925 0.25 -1.4
1,919,896 + ABI39_RS06925 0.26 -2.0
1,919,896 + ABI39_RS06925 0.26 -1.4
1,919,905 - ABI39_RS06925 0.26 -1.4
1,919,905 - ABI39_RS06925 0.26 -0.0
1,919,929 + ABI39_RS06925 0.28 -2.4
1,919,941 + ABI39_RS06925 0.29 -1.7
1,919,968 + ABI39_RS06925 0.31 -1.3
1,919,969 - ABI39_RS06925 0.32 +0.5
1,920,014 + ABI39_RS06925 0.35 -2.0
1,920,271 - ABI39_RS06925 0.55 +0.1
1,920,386 - ABI39_RS06925 0.65 -0.2
1,920,406 + ABI39_RS06925 0.66 -1.7
1,920,434 + ABI39_RS06925 0.68 -1.4
1,920,504 - ABI39_RS06925 0.74 -2.1
1,920,504 - ABI39_RS06925 0.74 -0.2
1,920,558 + ABI39_RS06925 0.78 -0.4
1,920,558 + ABI39_RS06925 0.78 -1.5
1,920,567 - ABI39_RS06925 0.79 -1.2
1,920,605 + ABI39_RS06925 0.82 -2.1
1,920,606 - ABI39_RS06925 0.82 -1.4
1,920,685 - ABI39_RS06925 0.88 -0.7
1,920,700 - ABI39_RS06925 0.89 -0.0
1,920,822 - -1.5
1,920,883 - +0.1
1,921,092 - ABI39_RS06930 0.22 -1.4
1,921,131 + ABI39_RS06930 0.26 +0.7
1,921,245 + ABI39_RS06930 0.36 +0.6
1,921,246 - ABI39_RS06930 0.36 -0.1
1,921,372 - ABI39_RS06930 0.47 +0.1
1,921,568 - ABI39_RS06930 0.65 +0.6
1,921,594 - ABI39_RS06930 0.67 +0.5
1,921,677 - ABI39_RS06930 0.74 +0.5
1,921,680 + ABI39_RS06930 0.75 +0.1
1,921,681 - ABI39_RS06930 0.75 +0.4
1,921,703 + ABI39_RS06930 0.77 +0.1
1,921,714 - ABI39_RS06930 0.78 +0.1
1,921,771 - ABI39_RS06930 0.83 -1.5
1,921,793 - ABI39_RS06930 0.85 -0.1
1,921,797 - ABI39_RS06930 0.85 +0.2

Or see this region's nucleotide sequence