Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS24725

Experiment: Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS24720 and LU632_RS24725 are separated by 440 nucleotidesLU632_RS24725 and LU632_RS24730 are separated by 30 nucleotides LU632_RS24720: LU632_RS24720 - hypothetical protein, at 4,710,489 to 4,711,262 _RS24720 LU632_RS24725: LU632_RS24725 - hypothetical protein, at 4,711,703 to 4,711,915 _RS24725 LU632_RS24730: LU632_RS24730 - IS91 family transposase, at 4,711,946 to 4,713,169 _RS24730 Position (kb) 4711 4712Strain fitness (log2 ratio) -1 0 1 2 3at 4710.777 kb on - strand, within LU632_RS24720at 4710.971 kb on + strand, within LU632_RS24720at 4711.097 kb on + strand, within LU632_RS24720at 4711.152 kb on - strand, within LU632_RS24720at 4711.818 kb on + strand, within LU632_RS24725at 4711.818 kb on + strand, within LU632_RS24725at 4711.865 kb on - strand, within LU632_RS24725

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)
remove
4,710,777 - LU632_RS24720 0.37 +0.3
4,710,971 + LU632_RS24720 0.62 +0.6
4,711,097 + LU632_RS24720 0.79 -1.0
4,711,152 - LU632_RS24720 0.86 -0.8
4,711,818 + LU632_RS24725 0.54 +0.6
4,711,818 + LU632_RS24725 0.54 -0.7
4,711,865 - LU632_RS24725 0.76 +2.9

Or see this region's nucleotide sequence