Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS01650

Experiment: Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS01635 and LU632_RS01640 overlap by 4 nucleotidesLU632_RS01640 and LU632_RS01645 overlap by 4 nucleotidesLU632_RS01645 and LU632_RS01650 overlap by 14 nucleotidesLU632_RS01650 and LU632_RS01655 overlap by 8 nucleotidesLU632_RS01655 and LU632_RS01660 overlap by 11 nucleotides LU632_RS01635: LU632_RS01635 - phage virion morphogenesis protein, at 324,191 to 324,829 _RS01635 LU632_RS01640: LU632_RS01640 - phage baseplate assembly protein V, at 324,826 to 325,401 _RS01640 LU632_RS01645: LU632_RS01645 - GPW/gp25 family protein, at 325,398 to 325,766 _RS01645 LU632_RS01650: LU632_RS01650 - baseplate J/gp47 family protein, at 325,753 to 326,649 _RS01650 LU632_RS01655: LU632_RS01655 - phage tail protein I, at 326,642 to 327,256 _RS01655 LU632_RS01660: LU632_RS01660 - phage tail protein, at 327,246 to 328,247 _RS01660 Position (kb) 325 326 327Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 325.023 kb on + strand, within LU632_RS01640at 325.067 kb on - strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.194 kb on + strand, within LU632_RS01640at 325.195 kb on - strand, within LU632_RS01640at 325.413 kb on - strandat 325.586 kb on + strand, within LU632_RS01645at 325.587 kb on - strand, within LU632_RS01645at 325.650 kb on - strand, within LU632_RS01645at 325.650 kb on - strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.652 kb on + strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.653 kb on - strand, within LU632_RS01645at 325.795 kb on - strandat 325.922 kb on + strand, within LU632_RS01650at 325.923 kb on - strand, within LU632_RS01650at 326.176 kb on + strand, within LU632_RS01650at 326.176 kb on + strand, within LU632_RS01650at 326.177 kb on - strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.246 kb on + strand, within LU632_RS01650at 326.247 kb on - strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.360 kb on + strand, within LU632_RS01650at 326.361 kb on - strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.383 kb on + strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.384 kb on - strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.385 kb on + strand, within LU632_RS01650at 326.386 kb on - strand, within LU632_RS01650at 326.386 kb on - strand, within LU632_RS01650at 326.404 kb on + strand, within LU632_RS01650at 326.404 kb on + strand, within LU632_RS01650at 326.405 kb on - strand, within LU632_RS01650at 326.405 kb on - strand, within LU632_RS01650at 326.648 kb on - strandat 326.648 kb on - strandat 326.749 kb on + strand, within LU632_RS01655at 327.179 kb on - strand, within LU632_RS01655at 327.179 kb on - strand, within LU632_RS01655at 327.201 kb on - strandat 327.201 kb on - strandat 327.202 kb on + strandat 327.255 kb on - strandat 327.255 kb on - strandat 327.259 kb on - strandat 327.453 kb on - strand, within LU632_RS01660at 327.464 kb on + strand, within LU632_RS01660at 327.573 kb on + strand, within LU632_RS01660

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Main Stem (TE-S-M5-MS)
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325,023 + LU632_RS01640 0.34 -1.2
325,067 - LU632_RS01640 0.42 -0.9
325,194 + LU632_RS01640 0.64 +0.8
325,194 + LU632_RS01640 0.64 +1.6
325,194 + LU632_RS01640 0.64 +0.9
325,194 + LU632_RS01640 0.64 +1.8
325,195 - LU632_RS01640 0.64 -0.8
325,413 - -2.1
325,586 + LU632_RS01645 0.51 -2.5
325,587 - LU632_RS01645 0.51 -0.1
325,650 - LU632_RS01645 0.68 -0.9
325,650 - LU632_RS01645 0.68 -1.9
325,652 + LU632_RS01645 0.69 -0.4
325,652 + LU632_RS01645 0.69 -0.2
325,652 + LU632_RS01645 0.69 +0.3
325,653 - LU632_RS01645 0.69 -0.0
325,653 - LU632_RS01645 0.69 -0.1
325,795 - -0.5
325,922 + LU632_RS01650 0.19 -1.4
325,923 - LU632_RS01650 0.19 -0.1
326,176 + LU632_RS01650 0.47 +0.9
326,176 + LU632_RS01650 0.47 -2.4
326,177 - LU632_RS01650 0.47 -0.5
326,246 + LU632_RS01650 0.55 +0.6
326,246 + LU632_RS01650 0.55 -0.7
326,246 + LU632_RS01650 0.55 -0.9
326,247 - LU632_RS01650 0.55 -0.9
326,360 + LU632_RS01650 0.68 +0.9
326,360 + LU632_RS01650 0.68 +0.6
326,360 + LU632_RS01650 0.68 -1.9
326,361 - LU632_RS01650 0.68 -1.2
326,383 + LU632_RS01650 0.70 +0.8
326,383 + LU632_RS01650 0.70 +0.7
326,383 + LU632_RS01650 0.70 -0.2
326,384 - LU632_RS01650 0.70 -0.9
326,384 - LU632_RS01650 0.70 -1.5
326,384 - LU632_RS01650 0.70 +2.6
326,384 - LU632_RS01650 0.70 -0.5
326,384 - LU632_RS01650 0.70 -0.9
326,385 + LU632_RS01650 0.70 -0.0
326,385 + LU632_RS01650 0.70 -0.9
326,385 + LU632_RS01650 0.70 -1.0
326,386 - LU632_RS01650 0.71 +0.7
326,386 - LU632_RS01650 0.71 -0.4
326,404 + LU632_RS01650 0.73 +1.5
326,404 + LU632_RS01650 0.73 -0.2
326,405 - LU632_RS01650 0.73 +0.5
326,405 - LU632_RS01650 0.73 -1.7
326,648 - -0.2
326,648 - -3.6
326,749 + LU632_RS01655 0.17 -0.4
327,179 - LU632_RS01655 0.87 -1.4
327,179 - LU632_RS01655 0.87 +0.5
327,201 - +2.2
327,201 - -0.2
327,202 + -0.3
327,255 - -2.9
327,255 - -0.0
327,259 - +0.6
327,453 - LU632_RS01660 0.21 -1.3
327,464 + LU632_RS01660 0.22 +0.2
327,573 + LU632_RS01660 0.33 +2.1

Or see this region's nucleotide sequence