Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ltrA and tnp-IS3 are separated by 128 nucleotides tnp-IS3 and HEPCGN_27080 overlap by 8 nucleotides HEPCGN_27080 and HEPCGN_27085 are separated by 41 nucleotides
HEPCGN_27070: ltrA - group II intron reverse transcriptase/maturase, at 4,156,516 to 4,158,039
ltrA
HEPCGN_27075: tnp-IS3 - IS3 family transposase, at 4,158,168 to 4,158,608
tnp-IS3
HEPCGN_27080: HEPCGN_27080 - DNA packaging protein from bacteriophage origin, at 4,158,601 to 4,158,924
_27080
HEPCGN_27085: HEPCGN_27085 - Major capsid protein, at 4,158,966 to 4,159,991
_27085
Position (kb) 4158
4159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4158.602 kb on + strand at 4158.602 kb on + strand at 4158.613 kb on + strand at 4158.721 kb on + strand, within HEPCGN_27080 at 4158.721 kb on + strand, within HEPCGN_27080 at 4158.722 kb on - strand, within HEPCGN_27080 at 4158.968 kb on - strand at 4158.979 kb on - strand at 4159.139 kb on - strand, within HEPCGN_27085 at 4159.139 kb on - strand, within HEPCGN_27085 at 4159.139 kb on - strand, within HEPCGN_27085 at 4159.139 kb on - strand, within HEPCGN_27085 at 4159.139 kb on - strand, within HEPCGN_27085 at 4159.258 kb on + strand, within HEPCGN_27085 at 4159.269 kb on - strand, within HEPCGN_27085 at 4159.270 kb on + strand, within HEPCGN_27085 at 4159.296 kb on + strand, within HEPCGN_27085
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 4,158,602 + -3.5 4,158,602 + -1.2 4,158,613 + -0.2 4,158,721 + HEPCGN_27080 0.37 -0.2 4,158,721 + HEPCGN_27080 0.37 -1.0 4,158,722 - HEPCGN_27080 0.37 +1.0 4,158,968 - +1.8 4,158,979 - +0.4 4,159,139 - HEPCGN_27085 0.17 -1.5 4,159,139 - HEPCGN_27085 0.17 -3.1 4,159,139 - HEPCGN_27085 0.17 -0.7 4,159,139 - HEPCGN_27085 0.17 +1.0 4,159,139 - HEPCGN_27085 0.17 +0.8 4,159,258 + HEPCGN_27085 0.28 -1.0 4,159,269 - HEPCGN_27085 0.30 +0.8 4,159,270 + HEPCGN_27085 0.30 +0.6 4,159,296 + HEPCGN_27085 0.32 -0.3
Or see this region's nucleotide sequence