Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_26860 and lacF are separated by 55 nucleotides lacF and HEPCGN_26870 are separated by 27 nucleotides HEPCGN_26870 and HEPCGN_26875 are separated by 113 nucleotides HEPCGN_26875 and HEPCGN_26880 are separated by 198 nucleotides
HEPCGN_26860: HEPCGN_26860 - cryptic outer membrane porin BglH, at 4,117,904 to 4,119,577
_26860
HEPCGN_26865: lacF - PTS lactose/cellobiose transporter subunit IIA, at 4,119,633 to 4,119,944
lacF
HEPCGN_26870: HEPCGN_26870 - PTS cellobiose transporter subunit IIC, at 4,119,972 to 4,121,294
_26870
HEPCGN_26875: HEPCGN_26875 - PTS sugar transporter subunit IIB, at 4,121,408 to 4,121,719
_26875
HEPCGN_26880: HEPCGN_26880 - GntR family transcriptional regulator, at 4,121,918 to 4,122,616
_26880
Position (kb) 4119
4120
4121
4122 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4119.005 kb on - strand, within HEPCGN_26860 at 4119.027 kb on - strand, within HEPCGN_26860 at 4119.082 kb on - strand, within HEPCGN_26860 at 4119.082 kb on - strand, within HEPCGN_26860 at 4119.166 kb on - strand, within HEPCGN_26860 at 4119.253 kb on + strand, within HEPCGN_26860 at 4119.485 kb on + strand at 4119.582 kb on + strand at 4119.741 kb on + strand, within lacF at 4120.240 kb on - strand, within HEPCGN_26870 at 4120.521 kb on - strand, within HEPCGN_26870 at 4120.727 kb on + strand, within HEPCGN_26870 at 4121.703 kb on - strand at 4121.781 kb on + strand at 4122.278 kb on + strand, within HEPCGN_26880 at 4122.282 kb on + strand, within HEPCGN_26880
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 4,119,005 - HEPCGN_26860 0.66 +0.1 4,119,027 - HEPCGN_26860 0.67 +0.0 4,119,082 - HEPCGN_26860 0.70 -2.1 4,119,082 - HEPCGN_26860 0.70 +0.0 4,119,166 - HEPCGN_26860 0.75 +3.7 4,119,253 + HEPCGN_26860 0.81 +1.4 4,119,485 + +3.2 4,119,582 + +1.6 4,119,741 + lacF HEPCGN_26865 0.35 +0.8 4,120,240 - HEPCGN_26870 0.20 +0.0 4,120,521 - HEPCGN_26870 0.41 -0.7 4,120,727 + HEPCGN_26870 0.57 -0.6 4,121,703 - -0.7 4,121,781 + +0.7 4,122,278 + HEPCGN_26880 0.52 +0.6 4,122,282 + HEPCGN_26880 0.52 +0.0
Or see this region's nucleotide sequence