Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20965

Experiment: TP7

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP7
2,942,758	-	ppx	HEPCGN_20960	0.37	+2.0
2,942,826	+	ppx	HEPCGN_20960	0.41	+1.4
2,942,985	-	ppx	HEPCGN_20960	0.51	+2.1
2,943,027	-	ppx	HEPCGN_20960	0.54	-0.3
2,943,132	-	ppx	HEPCGN_20960	0.61	+2.0
2,943,160	+	ppx	HEPCGN_20960	0.63	+1.4
2,943,207	+	ppx	HEPCGN_20960	0.66	+0.7
2,943,476	+	ppx	HEPCGN_20960	0.83	+0.2
2,943,476	+	ppx	HEPCGN_20960	0.83	+0.1
2,943,477	-	ppx	HEPCGN_20960	0.83	+1.2
2,943,477	-	ppx	HEPCGN_20960	0.83	+0.8
2,943,477	-	ppx	HEPCGN_20960	0.83	+1.7
2,943,568	+	ppx	HEPCGN_20960	0.89	+1.8
2,943,623	-				-0.6
2,943,653	+				+0.6
2,943,653	+				-2.6
2,943,654	-				-0.0
2,943,719	-				+1.0
2,943,740	-				+0.9
2,943,827	+				-1.8
2,943,827	+				-0.8
2,943,845	+				-1.6
2,943,848	-				+0.1
2,943,877	-				-0.9
2,943,954	-	ppk1	HEPCGN_20965	0.10	-0.9
2,944,017	-	ppk1	HEPCGN_20965	0.13	-2.0
2,944,191	-	ppk1	HEPCGN_20965	0.22	-3.3
2,944,261	+	ppk1	HEPCGN_20965	0.25	-0.8
2,944,262	-	ppk1	HEPCGN_20965	0.25	-2.4
2,944,296	+	ppk1	HEPCGN_20965	0.27	-2.2
2,944,296	+	ppk1	HEPCGN_20965	0.27	-2.4
2,944,297	-	ppk1	HEPCGN_20965	0.27	-1.6
2,944,300	+	ppk1	HEPCGN_20965	0.27	-2.1
2,944,300	+	ppk1	HEPCGN_20965	0.27	-0.4
2,944,301	-	ppk1	HEPCGN_20965	0.27	-0.0
2,944,394	-	ppk1	HEPCGN_20965	0.32	-2.6
2,944,450	+	ppk1	HEPCGN_20965	0.34	-2.2
2,944,529	+	ppk1	HEPCGN_20965	0.38	-1.1
2,944,529	+	ppk1	HEPCGN_20965	0.38	-1.3
2,944,530	-	ppk1	HEPCGN_20965	0.38	-0.8
2,944,530	-	ppk1	HEPCGN_20965	0.38	-2.2
2,944,760	+	ppk1	HEPCGN_20965	0.49	-1.2
2,944,771	+	ppk1	HEPCGN_20965	0.50	-1.8
2,944,772	-	ppk1	HEPCGN_20965	0.50	-0.5
2,944,774	+	ppk1	HEPCGN_20965	0.50	-1.6
2,944,774	+	ppk1	HEPCGN_20965	0.50	-1.9
2,944,775	-	ppk1	HEPCGN_20965	0.50	-3.3
2,944,775	-	ppk1	HEPCGN_20965	0.50	-0.3
2,944,775	-	ppk1	HEPCGN_20965	0.50	-1.8
2,944,830	-	ppk1	HEPCGN_20965	0.53	-2.2
2,945,100	+	ppk1	HEPCGN_20965	0.66	+1.0
2,945,100	+	ppk1	HEPCGN_20965	0.66	-1.2
2,945,344	+	ppk1	HEPCGN_20965	0.78	-4.1
2,945,345	-	ppk1	HEPCGN_20965	0.78	-0.8
2,945,345	-	ppk1	HEPCGN_20965	0.78	-0.7
2,945,367	+	ppk1	HEPCGN_20965	0.79	-1.4
2,945,399	+	ppk1	HEPCGN_20965	0.80	-0.7
2,945,399	+	ppk1	HEPCGN_20965	0.80	-2.0
2,945,417	-	ppk1	HEPCGN_20965	0.81	-3.0
2,945,424	-	ppk1	HEPCGN_20965	0.82	-0.4
2,945,618	+				+0.8
2,945,618	+				-2.2
2,945,657	-				-1.3
2,945,657	-				+0.4
2,945,681	-				+3.0
2,945,785	+				+0.1
2,945,785	+				+1.4
2,945,786	-				-0.5
2,945,787	+				+0.5
2,945,787	+				+0.1
2,945,787	+				-0.0
2,945,787	+				-0.3
2,945,805	+				-0.7
2,945,850	-				+1.3
2,945,861	+				-2.1
2,945,879	+				+1.0
2,945,879	+				-0.1
2,945,880	-				-0.1
2,946,089	+	purN	HEPCGN_20970	0.18	+0.9
2,946,148	-	purN	HEPCGN_20970	0.27	+0.7
2,946,166	-	purN	HEPCGN_20970	0.30	-0.2
2,946,171	-	purN	HEPCGN_20970	0.31	+0.5
2,946,216	-	purN	HEPCGN_20970	0.38	-0.8
2,946,382	+	purN	HEPCGN_20970	0.64	+0.4
2,946,383	-	purN	HEPCGN_20970	0.64	+1.2
2,946,383	-	purN	HEPCGN_20970	0.64	+0.1
2,946,383	-	purN	HEPCGN_20970	0.64	-0.1
2,946,415	+	purN	HEPCGN_20970	0.69	-0.5
2,946,415	+	purN	HEPCGN_20970	0.69	-1.0
2,946,452	+	purN	HEPCGN_20970	0.74	-2.3
2,946,453	-	purN	HEPCGN_20970	0.75	+1.0
2,946,537	-	purN	HEPCGN_20970	0.88	-1.3
2,946,563	+				+0.2
2,946,563	+				-1.0
2,946,578	+				+0.3
2,946,596	+				-0.5
2,946,596	+				+3.0
2,946,608	+				-1.3
2,946,736	+	purM	HEPCGN_20975	0.12	-0.0
2,946,737	-	purM	HEPCGN_20975	0.12	+0.1