Strain Fitness in Escherichia coli ECOR38 around HEPCGN_13735

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgyrB and tnp-IS3 are separated by 155 nucleotidestnp-IS3 and tnp-IS1397 are separated by 224 nucleotidestnp-IS1397 and yidB are separated by 170 nucleotides HEPCGN_13725: gyrB - DNA topoisomerase (ATP-hydrolyzing) subunit B, at 1,495,099 to 1,497,513 gyrB HEPCGN_13735: tnp-IS3 - IS3 family transposase, at 1,497,669 to 1,498,190 tnp-IS3 HEPCGN_13740: tnp-IS1397 - IS3 family IS1397 transposase, at 1,498,415 to 1,499,017 tnp-IS1397 HEPCGN_13745: yidB - Uncharacterized protein YidB, at 1,499,188 to 1,499,586 yidB Position (kb) 1497 1498 1499Strain fitness (log2 ratio) -1 0 1 2at 1497.512 kb on - strandat 1497.520 kb on + strandat 1497.520 kb on + strandat 1499.075 kb on + strandat 1499.076 kb on - strandat 1499.076 kb on - strandat 1499.076 kb on - strandat 1499.076 kb on - strandat 1499.077 kb on + strandat 1499.077 kb on + strandat 1499.078 kb on - strandat 1499.129 kb on + strandat 1499.130 kb on - strandat 1499.145 kb on + strandat 1499.146 kb on - strandat 1499.174 kb on + strandat 1499.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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1,497,512 - -1.4
1,497,520 + +0.1
1,497,520 + -0.5
1,499,075 + +0.1
1,499,076 - +1.2
1,499,076 - +0.0
1,499,076 - +0.8
1,499,076 - +0.7
1,499,077 + -0.1
1,499,077 + +0.4
1,499,078 - -1.0
1,499,129 + +0.1
1,499,130 - +1.0
1,499,145 + -0.5
1,499,146 - -0.1
1,499,174 + -0.7
1,499,185 - +1.9

Or see this region's nucleotide sequence