Strain Fitness in Escherichia coli ECOR38 around HEPCGN_10925

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_10920 and HEPCGN_10925 overlap by 8 nucleotidesHEPCGN_10925 and ulaA overlap by 4 nucleotides HEPCGN_10920: HEPCGN_10920 - transketolase, at 927,130 to 928,083 _10920 HEPCGN_10925: HEPCGN_10925 - transketolase, at 928,076 to 928,906 _10925 HEPCGN_10930: ulaA - PTS ascorbate transporter subunit IIC, at 928,903 to 930,291 ulaA Position (kb) 928 929Strain fitness (log2 ratio) -2 -1 0 1 2 3at 927.097 kb on - strandat 927.137 kb on - strandat 927.159 kb on + strandat 927.159 kb on + strandat 927.159 kb on + strandat 927.160 kb on - strandat 927.306 kb on + strand, within HEPCGN_10920at 927.361 kb on + strand, within HEPCGN_10920at 927.388 kb on - strand, within HEPCGN_10920at 927.478 kb on + strand, within HEPCGN_10920at 927.478 kb on + strand, within HEPCGN_10920at 927.502 kb on + strand, within HEPCGN_10920at 927.502 kb on + strand, within HEPCGN_10920at 927.503 kb on - strand, within HEPCGN_10920at 927.505 kb on + strand, within HEPCGN_10920at 927.506 kb on - strand, within HEPCGN_10920at 927.525 kb on + strand, within HEPCGN_10920at 927.526 kb on - strand, within HEPCGN_10920at 927.535 kb on - strand, within HEPCGN_10920at 927.546 kb on - strand, within HEPCGN_10920at 927.573 kb on + strand, within HEPCGN_10920at 927.574 kb on - strand, within HEPCGN_10920at 927.702 kb on + strand, within HEPCGN_10920at 927.702 kb on + strand, within HEPCGN_10920at 927.702 kb on + strand, within HEPCGN_10920at 927.702 kb on + strand, within HEPCGN_10920at 927.703 kb on - strand, within HEPCGN_10920at 927.703 kb on - strand, within HEPCGN_10920at 927.703 kb on - strand, within HEPCGN_10920at 927.703 kb on - strand, within HEPCGN_10920at 927.703 kb on - strand, within HEPCGN_10920at 927.749 kb on - strand, within HEPCGN_10920at 927.749 kb on - strand, within HEPCGN_10920at 927.750 kb on + strand, within HEPCGN_10920at 927.751 kb on - strand, within HEPCGN_10920at 927.787 kb on - strand, within HEPCGN_10920at 927.826 kb on - strand, within HEPCGN_10920at 927.831 kb on + strand, within HEPCGN_10920at 927.831 kb on + strand, within HEPCGN_10920at 927.831 kb on + strand, within HEPCGN_10920at 927.832 kb on - strand, within HEPCGN_10920at 927.832 kb on - strand, within HEPCGN_10920at 927.909 kb on + strand, within HEPCGN_10920at 927.910 kb on - strand, within HEPCGN_10920at 927.910 kb on - strand, within HEPCGN_10920at 927.910 kb on - strand, within HEPCGN_10920at 928.078 kb on - strandat 928.145 kb on + strandat 928.145 kb on + strandat 928.145 kb on + strandat 928.146 kb on - strandat 928.146 kb on - strandat 928.160 kb on - strand, within HEPCGN_10925at 928.195 kb on + strand, within HEPCGN_10925at 928.196 kb on - strand, within HEPCGN_10925at 928.250 kb on - strand, within HEPCGN_10925at 928.254 kb on - strand, within HEPCGN_10925at 928.459 kb on + strand, within HEPCGN_10925at 928.459 kb on + strand, within HEPCGN_10925at 928.459 kb on + strand, within HEPCGN_10925at 928.460 kb on - strand, within HEPCGN_10925at 928.613 kb on + strand, within HEPCGN_10925at 928.634 kb on + strand, within HEPCGN_10925at 928.635 kb on - strand, within HEPCGN_10925at 928.682 kb on - strand, within HEPCGN_10925at 928.682 kb on - strand, within HEPCGN_10925at 928.687 kb on - strand, within HEPCGN_10925at 928.725 kb on + strand, within HEPCGN_10925at 928.726 kb on - strand, within HEPCGN_10925at 928.770 kb on - strand, within HEPCGN_10925at 928.852 kb on + strandat 928.852 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.868 kb on + strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.869 kb on - strandat 928.870 kb on + strandat 928.871 kb on - strandat 928.993 kb on + strandat 928.997 kb on - strandat 928.997 kb on - strandat 928.997 kb on - strandat 929.028 kb on - strandat 929.028 kb on - strandat 929.088 kb on + strand, within ulaAat 929.089 kb on - strand, within ulaAat 929.129 kb on - strand, within ulaAat 929.142 kb on + strand, within ulaAat 929.142 kb on + strand, within ulaAat 929.149 kb on + strand, within ulaAat 929.150 kb on - strand, within ulaAat 929.291 kb on - strand, within ulaAat 929.291 kb on - strand, within ulaAat 929.332 kb on + strand, within ulaAat 929.332 kb on + strand, within ulaAat 929.333 kb on - strand, within ulaAat 929.333 kb on - strand, within ulaAat 929.431 kb on + strand, within ulaAat 929.431 kb on + strand, within ulaAat 929.432 kb on - strand, within ulaAat 929.466 kb on + strand, within ulaAat 929.467 kb on - strand, within ulaAat 929.473 kb on + strand, within ulaAat 929.474 kb on - strand, within ulaAat 929.500 kb on + strand, within ulaAat 929.519 kb on + strand, within ulaAat 929.520 kb on - strand, within ulaAat 929.520 kb on - strand, within ulaAat 929.520 kb on - strand, within ulaAat 929.520 kb on - strand, within ulaAat 929.586 kb on - strand, within ulaAat 929.766 kb on + strand, within ulaAat 929.767 kb on - strand, within ulaAat 929.767 kb on - strand, within ulaAat 929.775 kb on + strand, within ulaAat 929.848 kb on + strand, within ulaA

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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927,097 - +0.4
927,137 - +0.6
927,159 + +0.4
927,159 + +0.0
927,159 + -2.2
927,160 - +0.3
927,306 + HEPCGN_10920 0.18 +0.5
927,361 + HEPCGN_10920 0.24 -0.4
927,388 - HEPCGN_10920 0.27 +0.2
927,478 + HEPCGN_10920 0.36 +0.7
927,478 + HEPCGN_10920 0.36 -2.3
927,502 + HEPCGN_10920 0.39 +0.7
927,502 + HEPCGN_10920 0.39 +0.1
927,503 - HEPCGN_10920 0.39 -0.1
927,505 + HEPCGN_10920 0.39 +0.3
927,506 - HEPCGN_10920 0.39 -0.3
927,525 + HEPCGN_10920 0.41 +0.6
927,526 - HEPCGN_10920 0.42 +2.8
927,535 - HEPCGN_10920 0.42 -0.1
927,546 - HEPCGN_10920 0.44 -1.4
927,573 + HEPCGN_10920 0.46 +0.6
927,574 - HEPCGN_10920 0.47 +0.4
927,702 + HEPCGN_10920 0.60 +0.6
927,702 + HEPCGN_10920 0.60 +0.5
927,702 + HEPCGN_10920 0.60 -1.1
927,702 + HEPCGN_10920 0.60 +1.1
927,703 - HEPCGN_10920 0.60 +0.8
927,703 - HEPCGN_10920 0.60 -1.1
927,703 - HEPCGN_10920 0.60 -0.1
927,703 - HEPCGN_10920 0.60 +2.8
927,703 - HEPCGN_10920 0.60 +0.1
927,749 - HEPCGN_10920 0.65 -1.0
927,749 - HEPCGN_10920 0.65 +0.5
927,750 + HEPCGN_10920 0.65 -0.6
927,751 - HEPCGN_10920 0.65 -0.0
927,787 - HEPCGN_10920 0.69 +0.6
927,826 - HEPCGN_10920 0.73 +1.0
927,831 + HEPCGN_10920 0.73 -1.6
927,831 + HEPCGN_10920 0.73 -1.3
927,831 + HEPCGN_10920 0.73 -0.5
927,832 - HEPCGN_10920 0.74 +0.5
927,832 - HEPCGN_10920 0.74 +0.8
927,909 + HEPCGN_10920 0.82 +0.4
927,910 - HEPCGN_10920 0.82 -0.0
927,910 - HEPCGN_10920 0.82 +0.0
927,910 - HEPCGN_10920 0.82 +0.6
928,078 - +1.2
928,145 + -1.6
928,145 + -0.0
928,145 + -0.1
928,146 - +1.7
928,146 - +0.6
928,160 - HEPCGN_10925 0.10 -0.4
928,195 + HEPCGN_10925 0.14 +1.2
928,196 - HEPCGN_10925 0.14 -0.5
928,250 - HEPCGN_10925 0.21 -1.1
928,254 - HEPCGN_10925 0.21 +1.3
928,459 + HEPCGN_10925 0.46 -0.8
928,459 + HEPCGN_10925 0.46 -1.1
928,459 + HEPCGN_10925 0.46 -0.5
928,460 - HEPCGN_10925 0.46 +0.3
928,613 + HEPCGN_10925 0.65 -0.8
928,634 + HEPCGN_10925 0.67 -1.4
928,635 - HEPCGN_10925 0.67 +0.9
928,682 - HEPCGN_10925 0.73 -0.2
928,682 - HEPCGN_10925 0.73 +0.5
928,687 - HEPCGN_10925 0.74 +0.5
928,725 + HEPCGN_10925 0.78 -0.3
928,726 - HEPCGN_10925 0.78 +0.0
928,770 - HEPCGN_10925 0.84 -0.5
928,852 + +1.1
928,852 + -0.0
928,868 + +0.2
928,868 + +0.1
928,868 + +1.1
928,868 + -0.1
928,868 + -0.7
928,868 + +0.2
928,869 - -1.5
928,869 - -0.2
928,869 - -0.5
928,869 - -0.6
928,869 - +0.4
928,869 - +0.6
928,869 - +0.7
928,869 - +0.5
928,869 - +1.6
928,869 - +0.7
928,870 + +0.7
928,871 - -2.4
928,993 + +0.6
928,997 - -0.4
928,997 - -0.8
928,997 - -1.2
929,028 - -1.0
929,028 - +0.5
929,088 + ulaA HEPCGN_10930 0.13 -0.2
929,089 - ulaA HEPCGN_10930 0.13 -1.1
929,129 - ulaA HEPCGN_10930 0.16 -0.5
929,142 + ulaA HEPCGN_10930 0.17 +0.3
929,142 + ulaA HEPCGN_10930 0.17 +1.2
929,149 + ulaA HEPCGN_10930 0.18 +0.6
929,150 - ulaA HEPCGN_10930 0.18 -0.2
929,291 - ulaA HEPCGN_10930 0.28 +0.4
929,291 - ulaA HEPCGN_10930 0.28 -0.4
929,332 + ulaA HEPCGN_10930 0.31 -0.1
929,332 + ulaA HEPCGN_10930 0.31 +1.2
929,333 - ulaA HEPCGN_10930 0.31 -1.2
929,333 - ulaA HEPCGN_10930 0.31 -1.1
929,431 + ulaA HEPCGN_10930 0.38 +1.0
929,431 + ulaA HEPCGN_10930 0.38 +1.5
929,432 - ulaA HEPCGN_10930 0.38 +1.0
929,466 + ulaA HEPCGN_10930 0.41 +0.8
929,467 - ulaA HEPCGN_10930 0.41 +0.2
929,473 + ulaA HEPCGN_10930 0.41 -1.4
929,474 - ulaA HEPCGN_10930 0.41 -0.4
929,500 + ulaA HEPCGN_10930 0.43 -0.1
929,519 + ulaA HEPCGN_10930 0.44 +1.5
929,520 - ulaA HEPCGN_10930 0.44 +0.2
929,520 - ulaA HEPCGN_10930 0.44 +0.2
929,520 - ulaA HEPCGN_10930 0.44 -0.2
929,520 - ulaA HEPCGN_10930 0.44 +0.5
929,586 - ulaA HEPCGN_10930 0.49 -0.2
929,766 + ulaA HEPCGN_10930 0.62 +0.9
929,767 - ulaA HEPCGN_10930 0.62 -0.2
929,767 - ulaA HEPCGN_10930 0.62 +0.9
929,775 + ulaA HEPCGN_10930 0.63 -0.8
929,848 + ulaA HEPCGN_10930 0.68 +1.3

Or see this region's nucleotide sequence