Strain Fitness in Escherichia coli ECOR38 around HEPCGN_09715

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntherA and HEPCGN_09710 are separated by 7 nucleotidesHEPCGN_09710 and sPS1 overlap by 4 nucleotidessPS1 and HEPCGN_09720 are separated by 201 nucleotidesHEPCGN_09720 and istA are separated by 139 nucleotides HEPCGN_09705: herA - nucleoside triphosphate hydrolase, at 687,585 to 689,270 herA HEPCGN_09710: HEPCGN_09710 - hypothetical protein, at 689,278 to 689,820 _09710 HEPCGN_09715: sPS1 - serine/threonine protein kinase, at 689,817 to 691,286 sPS1 HEPCGN_09720: HEPCGN_09720 - Prophage P4 integrase, at 691,488 to 691,763 _09720 HEPCGN_09725: istA - IS21 family transposase, at 691,903 to 692,565 istA Position (kb) 689 690 691 692Strain fitness (log2 ratio) -2 -1 0 1 2 3at 688.871 kb on + strand, within herAat 688.872 kb on - strand, within herAat 688.893 kb on - strand, within herAat 688.938 kb on - strand, within herAat 689.008 kb on + strand, within herAat 689.037 kb on - strand, within herAat 689.081 kb on + strand, within herAat 689.083 kb on + strand, within herAat 689.084 kb on - strand, within herAat 689.087 kb on + strand, within herAat 689.088 kb on - strand, within herAat 689.088 kb on - strand, within herAat 689.088 kb on - strand, within herAat 689.138 kb on - strandat 689.201 kb on + strandat 689.202 kb on - strandat 689.202 kb on - strandat 689.202 kb on - strandat 689.205 kb on - strandat 689.205 kb on - strandat 689.278 kb on - strandat 689.297 kb on + strandat 689.348 kb on + strand, within HEPCGN_09710at 689.348 kb on + strand, within HEPCGN_09710at 689.348 kb on + strand, within HEPCGN_09710at 689.364 kb on - strand, within HEPCGN_09710at 689.382 kb on + strand, within HEPCGN_09710at 689.406 kb on + strand, within HEPCGN_09710at 689.643 kb on - strand, within HEPCGN_09710at 689.678 kb on + strand, within HEPCGN_09710at 689.678 kb on + strand, within HEPCGN_09710at 689.679 kb on - strand, within HEPCGN_09710at 689.679 kb on - strand, within HEPCGN_09710at 689.679 kb on - strand, within HEPCGN_09710at 689.695 kb on - strand, within HEPCGN_09710at 689.874 kb on + strandat 690.008 kb on + strand, within sPS1at 690.019 kb on + strand, within sPS1at 690.020 kb on - strand, within sPS1at 690.042 kb on - strand, within sPS1at 690.071 kb on - strand, within sPS1at 690.074 kb on + strand, within sPS1at 690.075 kb on - strand, within sPS1at 690.088 kb on - strand, within sPS1at 690.090 kb on - strand, within sPS1at 690.149 kb on + strand, within sPS1at 690.149 kb on + strand, within sPS1at 690.186 kb on + strand, within sPS1at 690.232 kb on + strand, within sPS1at 690.254 kb on + strand, within sPS1at 690.427 kb on + strand, within sPS1at 690.430 kb on + strand, within sPS1at 690.431 kb on - strand, within sPS1at 690.445 kb on - strand, within sPS1at 690.445 kb on - strand, within sPS1at 690.446 kb on + strand, within sPS1at 690.452 kb on - strand, within sPS1at 690.452 kb on - strand, within sPS1at 690.498 kb on - strand, within sPS1at 690.548 kb on + strand, within sPS1at 690.548 kb on + strand, within sPS1at 690.548 kb on + strand, within sPS1at 690.551 kb on + strand, within sPS1at 690.551 kb on + strand, within sPS1at 690.551 kb on + strand, within sPS1at 690.551 kb on + strand, within sPS1at 690.551 kb on + strand, within sPS1at 690.552 kb on - strand, within sPS1at 690.587 kb on + strand, within sPS1at 690.596 kb on - strand, within sPS1at 690.686 kb on + strand, within sPS1at 690.687 kb on - strand, within sPS1at 690.707 kb on + strand, within sPS1at 690.762 kb on + strand, within sPS1at 690.823 kb on + strand, within sPS1at 690.891 kb on - strand, within sPS1at 690.905 kb on - strand, within sPS1at 691.059 kb on - strand, within sPS1at 691.222 kb on + strandat 691.280 kb on + strandat 691.318 kb on + strandat 691.502 kb on + strandat 691.618 kb on + strand, within HEPCGN_09720at 691.619 kb on - strand, within HEPCGN_09720at 691.637 kb on + strand, within HEPCGN_09720at 691.638 kb on - strand, within HEPCGN_09720at 691.665 kb on + strand, within HEPCGN_09720at 691.666 kb on - strand, within HEPCGN_09720at 691.788 kb on - strandat 691.788 kb on - strandat 691.867 kb on - strandat 691.867 kb on - strandat 691.869 kb on - strandat 691.869 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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688,871 + herA HEPCGN_09705 0.76 +0.7
688,872 - herA HEPCGN_09705 0.76 +0.5
688,893 - herA HEPCGN_09705 0.78 +0.8
688,938 - herA HEPCGN_09705 0.80 +0.7
689,008 + herA HEPCGN_09705 0.84 +0.7
689,037 - herA HEPCGN_09705 0.86 -0.7
689,081 + herA HEPCGN_09705 0.89 +1.4
689,083 + herA HEPCGN_09705 0.89 -0.2
689,084 - herA HEPCGN_09705 0.89 -0.6
689,087 + herA HEPCGN_09705 0.89 -0.6
689,088 - herA HEPCGN_09705 0.89 +1.6
689,088 - herA HEPCGN_09705 0.89 -1.1
689,088 - herA HEPCGN_09705 0.89 +1.6
689,138 - -0.5
689,201 + -0.9
689,202 - -0.2
689,202 - -0.5
689,202 - -0.1
689,205 - +0.3
689,205 - -0.6
689,278 - -0.6
689,297 + +0.4
689,348 + HEPCGN_09710 0.13 +0.6
689,348 + HEPCGN_09710 0.13 -0.4
689,348 + HEPCGN_09710 0.13 +0.3
689,364 - HEPCGN_09710 0.16 +0.3
689,382 + HEPCGN_09710 0.19 +0.0
689,406 + HEPCGN_09710 0.24 -0.5
689,643 - HEPCGN_09710 0.67 +0.5
689,678 + HEPCGN_09710 0.74 -2.3
689,678 + HEPCGN_09710 0.74 -1.7
689,679 - HEPCGN_09710 0.74 +0.2
689,679 - HEPCGN_09710 0.74 -0.1
689,679 - HEPCGN_09710 0.74 -0.3
689,695 - HEPCGN_09710 0.77 +1.0
689,874 + +1.0
690,008 + sPS1 HEPCGN_09715 0.13 +2.9
690,019 + sPS1 HEPCGN_09715 0.14 +2.0
690,020 - sPS1 HEPCGN_09715 0.14 +1.6
690,042 - sPS1 HEPCGN_09715 0.15 +3.0
690,071 - sPS1 HEPCGN_09715 0.17 +2.1
690,074 + sPS1 HEPCGN_09715 0.17 -0.0
690,075 - sPS1 HEPCGN_09715 0.18 +0.9
690,088 - sPS1 HEPCGN_09715 0.18 +0.8
690,090 - sPS1 HEPCGN_09715 0.19 +0.6
690,149 + sPS1 HEPCGN_09715 0.23 +1.6
690,149 + sPS1 HEPCGN_09715 0.23 +1.5
690,186 + sPS1 HEPCGN_09715 0.25 +1.9
690,232 + sPS1 HEPCGN_09715 0.28 +2.9
690,254 + sPS1 HEPCGN_09715 0.30 +2.7
690,427 + sPS1 HEPCGN_09715 0.41 +0.9
690,430 + sPS1 HEPCGN_09715 0.42 +1.6
690,431 - sPS1 HEPCGN_09715 0.42 +0.1
690,445 - sPS1 HEPCGN_09715 0.43 +2.0
690,445 - sPS1 HEPCGN_09715 0.43 +0.5
690,446 + sPS1 HEPCGN_09715 0.43 -0.7
690,452 - sPS1 HEPCGN_09715 0.43 +1.6
690,452 - sPS1 HEPCGN_09715 0.43 +1.4
690,498 - sPS1 HEPCGN_09715 0.46 +2.4
690,548 + sPS1 HEPCGN_09715 0.50 +2.1
690,548 + sPS1 HEPCGN_09715 0.50 +0.6
690,548 + sPS1 HEPCGN_09715 0.50 +1.4
690,551 + sPS1 HEPCGN_09715 0.50 +1.3
690,551 + sPS1 HEPCGN_09715 0.50 +1.3
690,551 + sPS1 HEPCGN_09715 0.50 -0.3
690,551 + sPS1 HEPCGN_09715 0.50 +1.3
690,551 + sPS1 HEPCGN_09715 0.50 +1.6
690,552 - sPS1 HEPCGN_09715 0.50 +0.6
690,587 + sPS1 HEPCGN_09715 0.52 -1.4
690,596 - sPS1 HEPCGN_09715 0.53 +2.5
690,686 + sPS1 HEPCGN_09715 0.59 +2.2
690,687 - sPS1 HEPCGN_09715 0.59 +2.1
690,707 + sPS1 HEPCGN_09715 0.61 +2.1
690,762 + sPS1 HEPCGN_09715 0.64 +1.0
690,823 + sPS1 HEPCGN_09715 0.68 +0.7
690,891 - sPS1 HEPCGN_09715 0.73 -2.3
690,905 - sPS1 HEPCGN_09715 0.74 +0.8
691,059 - sPS1 HEPCGN_09715 0.84 +1.7
691,222 + +1.3
691,280 + -0.1
691,318 + +0.9
691,502 + +1.2
691,618 + HEPCGN_09720 0.47 +1.2
691,619 - HEPCGN_09720 0.47 -0.2
691,637 + HEPCGN_09720 0.54 +1.4
691,638 - HEPCGN_09720 0.54 +1.1
691,665 + HEPCGN_09720 0.64 -2.6
691,666 - HEPCGN_09720 0.64 +0.6
691,788 - -2.1
691,788 - +1.2
691,867 - -0.4
691,867 - -0.6
691,869 - -0.9
691,869 - +0.3

Or see this region's nucleotide sequence