Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_08840 and HEPCGN_08845 are separated by 2 nucleotides HEPCGN_08845 and HEPCGN_08850 are separated by 85 nucleotides HEPCGN_08850 and kefC are separated by 80 nucleotides kefC and kefF overlap by 8 nucleotides kefF and yaaU are separated by 107 nucleotides
HEPCGN_08840: HEPCGN_08840 - Toxin CcdB, at 512,228 to 512,353
_08840
HEPCGN_08845: HEPCGN_08845 - antitoxin, at 512,356 to 512,589
_08845
HEPCGN_08850: HEPCGN_08850 - Dihydrofolate reductase, at 512,675 to 513,265
_08850
HEPCGN_08855: kefC - glutathione-regulated potassium-efflux system protein KefC, at 513,346 to 515,208
kefC
HEPCGN_08860: kefF - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 515,201 to 515,731
kefF
HEPCGN_08865: yaaU - Putative metabolite transport protein YaaU, at 515,839 to 517,170
yaaU
Position (kb) 513
514
515
516 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 512.506 kb on - strand, within HEPCGN_08845 at 512.509 kb on + strand, within HEPCGN_08845 at 512.575 kb on - strand at 512.613 kb on - strand at 512.620 kb on + strand at 512.620 kb on + strand at 512.620 kb on + strand at 512.621 kb on - strand at 512.623 kb on + strand at 512.623 kb on + strand at 512.624 kb on - strand at 512.624 kb on - strand at 512.625 kb on + strand at 512.633 kb on + strand at 512.643 kb on + strand at 512.643 kb on + strand at 512.644 kb on - strand at 512.644 kb on - strand at 512.647 kb on - strand at 512.647 kb on - strand at 512.664 kb on - strand at 512.668 kb on + strand at 512.668 kb on + strand at 512.669 kb on - strand at 513.188 kb on - strand, within HEPCGN_08850 at 513.189 kb on + strand, within HEPCGN_08850 at 513.190 kb on - strand, within HEPCGN_08850 at 513.190 kb on - strand, within HEPCGN_08850 at 513.190 kb on - strand, within HEPCGN_08850 at 513.190 kb on - strand, within HEPCGN_08850 at 513.190 kb on - strand, within HEPCGN_08850 at 513.345 kb on - strand at 513.347 kb on + strand at 513.347 kb on + strand at 513.558 kb on + strand, within kefC at 513.597 kb on - strand, within kefC at 513.702 kb on - strand, within kefC at 513.702 kb on - strand, within kefC at 513.729 kb on + strand, within kefC at 513.730 kb on - strand, within kefC at 513.870 kb on - strand, within kefC at 514.054 kb on - strand, within kefC at 514.186 kb on + strand, within kefC at 514.187 kb on - strand, within kefC at 514.214 kb on - strand, within kefC at 514.317 kb on + strand, within kefC at 514.318 kb on - strand, within kefC at 514.318 kb on - strand, within kefC at 514.459 kb on + strand, within kefC at 514.460 kb on - strand, within kefC at 514.608 kb on - strand, within kefC at 514.797 kb on + strand, within kefC at 514.798 kb on - strand, within kefC at 514.888 kb on + strand, within kefC at 514.889 kb on - strand, within kefC at 515.005 kb on - strand, within kefC at 515.091 kb on + strand at 515.091 kb on + strand at 515.091 kb on + strand at 515.091 kb on + strand at 515.092 kb on - strand at 515.092 kb on - strand at 515.092 kb on - strand at 515.116 kb on + strand at 515.116 kb on + strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.197 kb on - strand at 515.243 kb on - strand at 515.243 kb on - strand at 515.243 kb on - strand at 515.244 kb on + strand at 515.245 kb on - strand at 515.284 kb on + strand, within kefF at 515.285 kb on - strand, within kefF at 515.285 kb on - strand, within kefF at 515.332 kb on - strand, within kefF at 515.349 kb on - strand, within kefF at 515.470 kb on - strand, within kefF at 515.470 kb on - strand, within kefF at 515.736 kb on - strand at 515.779 kb on + strand at 515.780 kb on - strand at 515.796 kb on + strand at 515.804 kb on - strand at 515.807 kb on - strand at 515.868 kb on + strand at 515.868 kb on + strand at 515.939 kb on - strand at 515.981 kb on + strand, within yaaU at 515.981 kb on + strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.982 kb on - strand, within yaaU at 515.986 kb on - strand, within yaaU at 516.031 kb on - strand, within yaaU at 516.093 kb on + strand, within yaaU at 516.140 kb on + strand, within yaaU at 516.161 kb on - strand, within yaaU
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 512,506 - HEPCGN_08845 0.64 +0.2 512,509 + HEPCGN_08845 0.65 +0.8 512,575 - -0.5 512,613 - +0.1 512,620 + +0.3 512,620 + -0.5 512,620 + -1.8 512,621 - +1.3 512,623 + +0.3 512,623 + -0.2 512,624 - -1.4 512,624 - -0.6 512,625 + -0.5 512,633 + -2.2 512,643 + -0.7 512,643 + -0.6 512,644 - -0.5 512,644 - +0.5 512,647 - +0.0 512,647 - +1.3 512,664 - -0.4 512,668 + -0.1 512,668 + +0.8 512,669 - +1.3 513,188 - HEPCGN_08850 0.87 +0.4 513,189 + HEPCGN_08850 0.87 -0.2 513,190 - HEPCGN_08850 0.87 +0.0 513,190 - HEPCGN_08850 0.87 -1.5 513,190 - HEPCGN_08850 0.87 -0.0 513,190 - HEPCGN_08850 0.87 -0.2 513,190 - HEPCGN_08850 0.87 -0.8 513,345 - +0.1 513,347 + -1.8 513,347 + -1.9 513,558 + kefC HEPCGN_08855 0.11 +0.3 513,597 - kefC HEPCGN_08855 0.13 -0.1 513,702 - kefC HEPCGN_08855 0.19 +0.2 513,702 - kefC HEPCGN_08855 0.19 -0.6 513,729 + kefC HEPCGN_08855 0.21 -0.5 513,730 - kefC HEPCGN_08855 0.21 -3.3 513,870 - kefC HEPCGN_08855 0.28 -2.9 514,054 - kefC HEPCGN_08855 0.38 -0.5 514,186 + kefC HEPCGN_08855 0.45 +0.0 514,187 - kefC HEPCGN_08855 0.45 -0.2 514,214 - kefC HEPCGN_08855 0.47 +1.2 514,317 + kefC HEPCGN_08855 0.52 -1.2 514,318 - kefC HEPCGN_08855 0.52 -0.1 514,318 - kefC HEPCGN_08855 0.52 +2.0 514,459 + kefC HEPCGN_08855 0.60 -0.2 514,460 - kefC HEPCGN_08855 0.60 -0.8 514,608 - kefC HEPCGN_08855 0.68 -1.2 514,797 + kefC HEPCGN_08855 0.78 +0.6 514,798 - kefC HEPCGN_08855 0.78 +0.2 514,888 + kefC HEPCGN_08855 0.83 -0.5 514,889 - kefC HEPCGN_08855 0.83 +0.9 515,005 - kefC HEPCGN_08855 0.89 +0.9 515,091 + -1.1 515,091 + -0.8 515,091 + +0.2 515,091 + -0.5 515,092 - -0.6 515,092 - -0.7 515,092 - -0.7 515,116 + -1.0 515,116 + +0.1 515,197 - +0.9 515,197 - +0.1 515,197 - +0.5 515,197 - -0.5 515,197 - +0.0 515,243 - -1.1 515,243 - +0.5 515,243 - -0.1 515,244 + +0.0 515,245 - -0.5 515,284 + kefF HEPCGN_08860 0.16 -0.5 515,285 - kefF HEPCGN_08860 0.16 -0.4 515,285 - kefF HEPCGN_08860 0.16 +0.8 515,332 - kefF HEPCGN_08860 0.25 +1.1 515,349 - kefF HEPCGN_08860 0.28 +1.5 515,470 - kefF HEPCGN_08860 0.51 -1.0 515,470 - kefF HEPCGN_08860 0.51 -0.3 515,736 - -0.2 515,779 + -0.6 515,780 - -0.2 515,796 + -0.1 515,804 - -0.3 515,807 - -1.6 515,868 + +0.8 515,868 + -0.4 515,939 - -1.8 515,981 + yaaU HEPCGN_08865 0.11 +0.8 515,981 + yaaU HEPCGN_08865 0.11 -1.4 515,982 - yaaU HEPCGN_08865 0.11 -2.1 515,982 - yaaU HEPCGN_08865 0.11 -0.8 515,982 - yaaU HEPCGN_08865 0.11 -0.0 515,986 - yaaU HEPCGN_08865 0.11 -0.5 516,031 - yaaU HEPCGN_08865 0.14 +0.3 516,093 + yaaU HEPCGN_08865 0.19 +0.3 516,140 + yaaU HEPCGN_08865 0.23 +0.9 516,161 - yaaU HEPCGN_08865 0.24 -0.3
Or see this region's nucleotide sequence