Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yadN and yadV are separated by 104 nucleotides yadV and htrE are separated by 34 nucleotides htrE and fimA are separated by 118 nucleotides fimA and yadL are separated by 11 nucleotides
HEPCGN_08315: yadN - Uncharacterized fimbrial-like protein YadN, at 402,078 to 402,662
yadN
HEPCGN_08320: yadV - fimbrial chaperone, at 402,767 to 403,507
yadV
HEPCGN_08325: htrE - Yad fimbria usher protein HtrE, at 403,542 to 406,037
htrE
HEPCGN_08330: fimA - fimbrial protein, at 406,156 to 406,725
fimA
HEPCGN_08335: yadL - fimbrial-like protein YadL, at 406,737 to 407,342
yadL
Position (kb) 403
404
405
406
407 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 402.573 kb on - strand, within yadN at 402.643 kb on - strand at 402.664 kb on + strand at 402.949 kb on - strand, within yadV at 402.983 kb on - strand, within yadV at 402.985 kb on + strand, within yadV at 402.986 kb on - strand, within yadV at 403.022 kb on - strand, within yadV at 403.053 kb on + strand, within yadV at 403.053 kb on + strand, within yadV at 403.059 kb on - strand, within yadV at 403.082 kb on - strand, within yadV at 403.113 kb on + strand, within yadV at 403.190 kb on - strand, within yadV at 403.280 kb on - strand, within yadV at 403.290 kb on + strand, within yadV at 403.291 kb on - strand, within yadV at 403.424 kb on - strand, within yadV at 403.538 kb on + strand at 403.608 kb on + strand at 403.609 kb on - strand at 403.645 kb on - strand at 403.652 kb on + strand at 403.652 kb on + strand at 403.732 kb on - strand at 403.988 kb on + strand, within htrE at 403.990 kb on + strand, within htrE at 403.991 kb on - strand, within htrE at 404.032 kb on - strand, within htrE at 404.082 kb on + strand, within htrE at 404.083 kb on - strand, within htrE at 404.103 kb on - strand, within htrE at 404.103 kb on - strand, within htrE at 404.136 kb on + strand, within htrE at 404.137 kb on - strand, within htrE at 404.244 kb on + strand, within htrE at 404.248 kb on + strand, within htrE at 404.270 kb on - strand, within htrE at 404.299 kb on - strand, within htrE at 404.300 kb on + strand, within htrE at 404.301 kb on - strand, within htrE at 404.349 kb on + strand, within htrE at 404.415 kb on - strand, within htrE at 404.417 kb on + strand, within htrE at 404.438 kb on + strand, within htrE at 404.453 kb on + strand, within htrE at 404.661 kb on - strand, within htrE at 404.694 kb on + strand, within htrE at 404.697 kb on + strand, within htrE at 404.698 kb on - strand, within htrE at 404.716 kb on - strand, within htrE at 404.758 kb on - strand, within htrE at 404.909 kb on + strand, within htrE at 404.964 kb on - strand, within htrE at 405.037 kb on - strand, within htrE at 405.060 kb on - strand, within htrE at 405.069 kb on - strand, within htrE at 405.071 kb on + strand, within htrE at 405.169 kb on - strand, within htrE at 405.181 kb on - strand, within htrE at 405.181 kb on - strand, within htrE at 405.182 kb on + strand, within htrE at 405.186 kb on - strand, within htrE at 405.207 kb on + strand, within htrE at 405.258 kb on - strand, within htrE at 405.315 kb on - strand, within htrE at 405.332 kb on + strand, within htrE at 405.368 kb on + strand, within htrE at 405.420 kb on + strand, within htrE at 405.441 kb on - strand, within htrE at 405.441 kb on - strand, within htrE at 405.466 kb on + strand, within htrE at 405.467 kb on - strand, within htrE at 405.483 kb on + strand, within htrE at 405.484 kb on - strand, within htrE at 405.492 kb on + strand, within htrE at 405.492 kb on + strand, within htrE at 405.493 kb on - strand, within htrE at 405.493 kb on - strand, within htrE at 405.611 kb on + strand, within htrE at 405.612 kb on - strand, within htrE at 405.647 kb on - strand, within htrE at 405.696 kb on - strand, within htrE at 405.715 kb on - strand, within htrE at 405.814 kb on + strand at 405.930 kb on - strand at 406.293 kb on + strand, within fimA at 406.322 kb on - strand, within fimA at 406.473 kb on + strand, within fimA at 406.473 kb on + strand, within fimA at 406.483 kb on - strand, within fimA at 406.518 kb on + strand, within fimA at 406.519 kb on - strand, within fimA at 406.522 kb on - strand, within fimA at 406.548 kb on + strand, within fimA at 406.576 kb on - strand, within fimA at 406.732 kb on + strand at 406.733 kb on - strand at 406.850 kb on + strand, within yadL at 406.853 kb on + strand, within yadL at 406.859 kb on - strand, within yadL at 406.880 kb on + strand, within yadL at 406.881 kb on - strand, within yadL at 407.027 kb on - strand, within yadL
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 402,573 - yadN HEPCGN_08315 0.85 +0.4 402,643 - +0.3 402,664 + +0.8 402,949 - yadV HEPCGN_08320 0.25 +0.8 402,983 - yadV HEPCGN_08320 0.29 +0.5 402,985 + yadV HEPCGN_08320 0.29 +1.3 402,986 - yadV HEPCGN_08320 0.30 +0.5 403,022 - yadV HEPCGN_08320 0.34 +2.7 403,053 + yadV HEPCGN_08320 0.39 +1.0 403,053 + yadV HEPCGN_08320 0.39 +2.6 403,059 - yadV HEPCGN_08320 0.39 +0.2 403,082 - yadV HEPCGN_08320 0.43 +0.3 403,113 + yadV HEPCGN_08320 0.47 -0.2 403,190 - yadV HEPCGN_08320 0.57 +0.8 403,280 - yadV HEPCGN_08320 0.69 -0.5 403,290 + yadV HEPCGN_08320 0.71 -0.1 403,291 - yadV HEPCGN_08320 0.71 -0.6 403,424 - yadV HEPCGN_08320 0.89 -0.4 403,538 + +0.1 403,608 + +0.0 403,609 - +0.9 403,645 - +0.9 403,652 + -2.2 403,652 + -0.1 403,732 - +0.8 403,988 + htrE HEPCGN_08325 0.18 -0.2 403,990 + htrE HEPCGN_08325 0.18 -0.1 403,991 - htrE HEPCGN_08325 0.18 +0.2 404,032 - htrE HEPCGN_08325 0.20 -0.1 404,082 + htrE HEPCGN_08325 0.22 +0.2 404,083 - htrE HEPCGN_08325 0.22 +0.4 404,103 - htrE HEPCGN_08325 0.22 -1.3 404,103 - htrE HEPCGN_08325 0.22 -0.4 404,136 + htrE HEPCGN_08325 0.24 -0.4 404,137 - htrE HEPCGN_08325 0.24 +1.1 404,244 + htrE HEPCGN_08325 0.28 +0.0 404,248 + htrE HEPCGN_08325 0.28 +1.3 404,270 - htrE HEPCGN_08325 0.29 -1.2 404,299 - htrE HEPCGN_08325 0.30 +0.5 404,300 + htrE HEPCGN_08325 0.30 -0.7 404,301 - htrE HEPCGN_08325 0.30 -1.4 404,349 + htrE HEPCGN_08325 0.32 -1.5 404,415 - htrE HEPCGN_08325 0.35 -0.6 404,417 + htrE HEPCGN_08325 0.35 +1.3 404,438 + htrE HEPCGN_08325 0.36 -0.4 404,453 + htrE HEPCGN_08325 0.36 +0.6 404,661 - htrE HEPCGN_08325 0.45 +0.1 404,694 + htrE HEPCGN_08325 0.46 +2.1 404,697 + htrE HEPCGN_08325 0.46 +0.5 404,698 - htrE HEPCGN_08325 0.46 -0.6 404,716 - htrE HEPCGN_08325 0.47 -0.7 404,758 - htrE HEPCGN_08325 0.49 +1.7 404,909 + htrE HEPCGN_08325 0.55 -0.5 404,964 - htrE HEPCGN_08325 0.57 -3.0 405,037 - htrE HEPCGN_08325 0.60 -0.8 405,060 - htrE HEPCGN_08325 0.61 +0.5 405,069 - htrE HEPCGN_08325 0.61 +0.7 405,071 + htrE HEPCGN_08325 0.61 -2.6 405,169 - htrE HEPCGN_08325 0.65 +0.6 405,181 - htrE HEPCGN_08325 0.66 +0.9 405,181 - htrE HEPCGN_08325 0.66 +2.1 405,182 + htrE HEPCGN_08325 0.66 +0.8 405,186 - htrE HEPCGN_08325 0.66 +0.4 405,207 + htrE HEPCGN_08325 0.67 +0.0 405,258 - htrE HEPCGN_08325 0.69 +0.1 405,315 - htrE HEPCGN_08325 0.71 +0.8 405,332 + htrE HEPCGN_08325 0.72 +1.1 405,368 + htrE HEPCGN_08325 0.73 +1.8 405,420 + htrE HEPCGN_08325 0.75 +0.8 405,441 - htrE HEPCGN_08325 0.76 +0.4 405,441 - htrE HEPCGN_08325 0.76 -1.4 405,466 + htrE HEPCGN_08325 0.77 -1.9 405,467 - htrE HEPCGN_08325 0.77 +1.1 405,483 + htrE HEPCGN_08325 0.78 +0.3 405,484 - htrE HEPCGN_08325 0.78 -0.8 405,492 + htrE HEPCGN_08325 0.78 +0.1 405,492 + htrE HEPCGN_08325 0.78 +0.1 405,493 - htrE HEPCGN_08325 0.78 -1.9 405,493 - htrE HEPCGN_08325 0.78 +1.0 405,611 + htrE HEPCGN_08325 0.83 -0.0 405,612 - htrE HEPCGN_08325 0.83 -0.4 405,647 - htrE HEPCGN_08325 0.84 -1.1 405,696 - htrE HEPCGN_08325 0.86 -1.0 405,715 - htrE HEPCGN_08325 0.87 +0.2 405,814 + +0.2 405,930 - +1.1 406,293 + fimA HEPCGN_08330 0.24 +1.1 406,322 - fimA HEPCGN_08330 0.29 +0.5 406,473 + fimA HEPCGN_08330 0.56 +0.8 406,473 + fimA HEPCGN_08330 0.56 +0.9 406,483 - fimA HEPCGN_08330 0.57 -1.2 406,518 + fimA HEPCGN_08330 0.64 -1.8 406,519 - fimA HEPCGN_08330 0.64 -0.6 406,522 - fimA HEPCGN_08330 0.64 -0.2 406,548 + fimA HEPCGN_08330 0.69 -0.1 406,576 - fimA HEPCGN_08330 0.74 -0.4 406,732 + -0.4 406,733 - +0.4 406,850 + yadL HEPCGN_08335 0.19 -0.8 406,853 + yadL HEPCGN_08335 0.19 +0.2 406,859 - yadL HEPCGN_08335 0.20 +0.0 406,880 + yadL HEPCGN_08335 0.24 +0.5 406,881 - yadL HEPCGN_08335 0.24 +0.0 407,027 - yadL HEPCGN_08335 0.48 +1.1
Or see this region's nucleotide sequence