Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HEPCGN_07105 and tsx are separated by 298 nucleotides tsx and yajD are separated by 37 nucleotides yajD and parE are separated by 87 nucleotides parE and parD overlap by 8 nucleotides
HEPCGN_07105: HEPCGN_07105 - DUF3251 domain-containing protein, at 154,533 to 154,820
_07105
HEPCGN_07110: tsx - nucleoside-specific channel-forming protein Tsx, at 155,119 to 156,003
tsx
HEPCGN_07115: yajD - HNH nuclease YajD, at 156,041 to 156,388
yajD
HEPCGN_07120: parE - type II toxin-antitoxin system RelE/ParE family toxin, at 156,476 to 156,757
parE
HEPCGN_07125: parD - Antitoxin ParD, at 156,750 to 156,992
parD
Position (kb) 155
156
157 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 154.370 kb on + strand at 154.399 kb on - strand at 154.474 kb on - strand at 154.524 kb on - strand at 154.528 kb on + strand at 154.528 kb on + strand at 154.529 kb on - strand at 154.529 kb on - strand at 154.532 kb on + strand at 154.533 kb on - strand at 154.548 kb on - strand at 154.559 kb on + strand at 154.582 kb on + strand, within HEPCGN_07105 at 154.582 kb on + strand, within HEPCGN_07105 at 154.660 kb on + strand, within HEPCGN_07105 at 154.753 kb on + strand, within HEPCGN_07105 at 154.754 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105 at 154.787 kb on - strand, within HEPCGN_07105 at 154.902 kb on - strand at 154.902 kb on - strand at 155.035 kb on - strand at 155.047 kb on - strand at 155.047 kb on - strand at 155.114 kb on + strand at 155.114 kb on + strand at 155.114 kb on + strand at 155.114 kb on + strand at 155.115 kb on - strand at 155.251 kb on + strand, within tsx at 155.252 kb on - strand, within tsx at 155.287 kb on - strand, within tsx at 155.290 kb on + strand, within tsx at 155.335 kb on + strand, within tsx at 155.336 kb on - strand, within tsx at 155.491 kb on + strand, within tsx at 155.507 kb on - strand, within tsx at 155.507 kb on - strand, within tsx at 155.507 kb on - strand, within tsx at 155.513 kb on - strand, within tsx at 155.513 kb on - strand, within tsx at 155.513 kb on - strand, within tsx at 155.529 kb on + strand, within tsx at 155.529 kb on + strand, within tsx at 155.689 kb on + strand, within tsx at 155.690 kb on - strand, within tsx at 155.799 kb on + strand, within tsx at 155.814 kb on + strand, within tsx at 155.815 kb on - strand, within tsx at 155.815 kb on - strand, within tsx at 155.817 kb on + strand, within tsx at 155.817 kb on + strand, within tsx at 155.817 kb on + strand, within tsx at 155.817 kb on + strand, within tsx at 155.854 kb on + strand, within tsx at 155.869 kb on + strand, within tsx at 155.869 kb on + strand, within tsx at 155.978 kb on - strand at 155.987 kb on + strand at 155.988 kb on - strand at 156.087 kb on + strand, within yajD at 156.088 kb on - strand, within yajD at 156.190 kb on - strand, within yajD at 156.211 kb on + strand, within yajD at 156.236 kb on - strand, within yajD at 156.330 kb on - strand, within yajD at 156.477 kb on + strand at 156.478 kb on - strand at 156.542 kb on + strand, within parE at 156.542 kb on + strand, within parE at 156.543 kb on - strand, within parE at 156.544 kb on + strand, within parE at 156.544 kb on + strand, within parE at 156.544 kb on + strand, within parE at 156.545 kb on - strand, within parE at 156.545 kb on - strand, within parE at 156.549 kb on + strand, within parE at 156.549 kb on + strand, within parE at 156.552 kb on + strand, within parE at 156.665 kb on - strand, within parE at 156.705 kb on + strand, within parE at 156.706 kb on - strand, within parE at 156.712 kb on - strand, within parE at 156.712 kb on - strand, within parE at 156.751 kb on + strand at 156.753 kb on + strand at 156.754 kb on - strand at 156.950 kb on + strand, within parD at 156.954 kb on + strand, within parD at 156.955 kb on - strand, within parD
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 154,370 + +1.4 154,399 - -0.0 154,474 - -0.8 154,524 - +0.4 154,528 + -1.4 154,528 + -1.9 154,529 - -0.8 154,529 - +0.6 154,532 + +1.8 154,533 - -1.0 154,548 - -0.5 154,559 + +1.2 154,582 + HEPCGN_07105 0.17 -0.9 154,582 + HEPCGN_07105 0.17 -1.6 154,660 + HEPCGN_07105 0.44 -0.9 154,753 + HEPCGN_07105 0.76 -0.3 154,754 - HEPCGN_07105 0.77 -0.2 154,787 - HEPCGN_07105 0.88 +0.6 154,787 - HEPCGN_07105 0.88 +0.2 154,902 - -1.0 154,902 - +1.2 155,035 - +0.8 155,047 - +0.1 155,047 - +1.2 155,114 + +0.3 155,114 + +1.0 155,114 + +0.9 155,114 + -0.3 155,115 - -0.4 155,251 + tsx HEPCGN_07110 0.15 +1.0 155,252 - tsx HEPCGN_07110 0.15 +0.1 155,287 - tsx HEPCGN_07110 0.19 +0.0 155,290 + tsx HEPCGN_07110 0.19 +1.0 155,335 + tsx HEPCGN_07110 0.24 -0.2 155,336 - tsx HEPCGN_07110 0.25 -1.1 155,491 + tsx HEPCGN_07110 0.42 +0.2 155,507 - tsx HEPCGN_07110 0.44 -0.0 155,507 - tsx HEPCGN_07110 0.44 +1.7 155,507 - tsx HEPCGN_07110 0.44 +1.0 155,513 - tsx HEPCGN_07110 0.45 +1.0 155,513 - tsx HEPCGN_07110 0.45 +0.1 155,513 - tsx HEPCGN_07110 0.45 +0.1 155,529 + tsx HEPCGN_07110 0.46 +2.0 155,529 + tsx HEPCGN_07110 0.46 +1.1 155,689 + tsx HEPCGN_07110 0.64 +1.3 155,690 - tsx HEPCGN_07110 0.65 +1.3 155,799 + tsx HEPCGN_07110 0.77 +1.3 155,814 + tsx HEPCGN_07110 0.79 -1.6 155,815 - tsx HEPCGN_07110 0.79 -0.1 155,815 - tsx HEPCGN_07110 0.79 -0.2 155,817 + tsx HEPCGN_07110 0.79 +0.9 155,817 + tsx HEPCGN_07110 0.79 +1.1 155,817 + tsx HEPCGN_07110 0.79 -0.1 155,817 + tsx HEPCGN_07110 0.79 +0.9 155,854 + tsx HEPCGN_07110 0.83 +0.8 155,869 + tsx HEPCGN_07110 0.85 +0.9 155,869 + tsx HEPCGN_07110 0.85 +0.0 155,978 - -0.8 155,987 + +0.7 155,988 - +0.5 156,087 + yajD HEPCGN_07115 0.13 -0.3 156,088 - yajD HEPCGN_07115 0.14 +1.6 156,190 - yajD HEPCGN_07115 0.43 -0.1 156,211 + yajD HEPCGN_07115 0.49 -2.0 156,236 - yajD HEPCGN_07115 0.56 -1.2 156,330 - yajD HEPCGN_07115 0.83 +0.6 156,477 + -0.3 156,478 - +0.2 156,542 + parE HEPCGN_07120 0.23 +0.0 156,542 + parE HEPCGN_07120 0.23 +0.5 156,543 - parE HEPCGN_07120 0.24 -0.2 156,544 + parE HEPCGN_07120 0.24 +1.1 156,544 + parE HEPCGN_07120 0.24 +0.5 156,544 + parE HEPCGN_07120 0.24 -0.1 156,545 - parE HEPCGN_07120 0.24 +1.7 156,545 - parE HEPCGN_07120 0.24 -0.6 156,549 + parE HEPCGN_07120 0.26 -1.7 156,549 + parE HEPCGN_07120 0.26 +0.5 156,552 + parE HEPCGN_07120 0.27 +0.4 156,665 - parE HEPCGN_07120 0.67 -0.6 156,705 + parE HEPCGN_07120 0.81 -0.6 156,706 - parE HEPCGN_07120 0.82 -0.3 156,712 - parE HEPCGN_07120 0.84 -0.1 156,712 - parE HEPCGN_07120 0.84 -1.7 156,751 + -0.8 156,753 + +4.6 156,754 - -1.1 156,950 + parD HEPCGN_07125 0.82 +0.5 156,954 + parD HEPCGN_07125 0.84 +0.1 156,955 - parD HEPCGN_07125 0.84 +0.4
Or see this region's nucleotide sequence