Strain Fitness in Escherichia coli ECOR38 around HEPCGN_04710

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntznuB and znuC overlap by 4 nucleotidesznuC and znuA are separated by 24 nucleotidesznuA and mepM are separated by 15 nucleotides HEPCGN_04700: znuB - zinc ABC transporter permease subunit ZnuB, at 818,610 to 819,395 znuB HEPCGN_04705: znuC - zinc ABC transporter ATP-binding protein ZnuC, at 819,392 to 820,147 znuC HEPCGN_04710: znuA - zinc ABC transporter substrate-binding protein ZnuA, at 820,172 to 821,158 znuA HEPCGN_04715: mepM - murein DD-endopeptidase MepM, at 821,174 to 822,496 mepM Position (kb) 820 821 822Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 819.180 kb on + strand, within znuBat 819.224 kb on - strand, within znuBat 819.287 kb on + strand, within znuBat 819.299 kb on - strand, within znuBat 819.306 kb on - strand, within znuBat 819.452 kb on - strandat 819.465 kb on + strandat 819.466 kb on - strandat 819.469 kb on + strand, within znuCat 819.503 kb on - strand, within znuCat 819.624 kb on - strand, within znuCat 819.662 kb on - strand, within znuCat 819.672 kb on - strand, within znuCat 819.848 kb on - strand, within znuCat 819.856 kb on + strand, within znuCat 819.857 kb on - strand, within znuCat 819.933 kb on - strand, within znuCat 819.933 kb on - strand, within znuCat 819.948 kb on - strand, within znuCat 820.021 kb on + strand, within znuCat 820.181 kb on + strandat 820.208 kb on - strandat 820.380 kb on + strand, within znuAat 820.409 kb on + strand, within znuAat 820.507 kb on + strand, within znuAat 820.721 kb on - strand, within znuAat 820.832 kb on + strand, within znuAat 820.832 kb on + strand, within znuAat 820.853 kb on + strand, within znuAat 820.859 kb on + strand, within znuAat 820.947 kb on + strand, within znuAat 820.947 kb on + strand, within znuAat 820.947 kb on + strand, within znuAat 820.948 kb on - strand, within znuAat 820.948 kb on - strand, within znuAat 821.171 kb on + strandat 821.171 kb on + strandat 821.237 kb on - strandat 821.260 kb on + strandat 821.261 kb on - strandat 821.294 kb on + strandat 821.362 kb on - strand, within mepMat 821.466 kb on - strand, within mepMat 821.466 kb on - strand, within mepMat 821.466 kb on - strand, within mepMat 821.511 kb on - strand, within mepMat 821.515 kb on + strand, within mepMat 821.521 kb on + strand, within mepMat 821.530 kb on + strand, within mepMat 821.531 kb on - strand, within mepMat 821.663 kb on + strand, within mepMat 821.671 kb on + strand, within mepMat 821.744 kb on - strand, within mepMat 821.815 kb on + strand, within mepMat 821.931 kb on + strand, within mepMat 821.932 kb on - strand, within mepMat 821.958 kb on - strand, within mepM

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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819,180 + znuB HEPCGN_04700 0.73 +0.8
819,224 - znuB HEPCGN_04700 0.78 -1.1
819,287 + znuB HEPCGN_04700 0.86 +0.2
819,299 - znuB HEPCGN_04700 0.88 +1.0
819,306 - znuB HEPCGN_04700 0.89 +1.2
819,452 - -0.5
819,465 + -1.1
819,466 - +1.2
819,469 + znuC HEPCGN_04705 0.10 -0.6
819,503 - znuC HEPCGN_04705 0.15 +0.4
819,624 - znuC HEPCGN_04705 0.31 +0.4
819,662 - znuC HEPCGN_04705 0.36 +0.8
819,672 - znuC HEPCGN_04705 0.37 +0.1
819,848 - znuC HEPCGN_04705 0.60 -0.8
819,856 + znuC HEPCGN_04705 0.61 -1.7
819,857 - znuC HEPCGN_04705 0.62 +1.3
819,933 - znuC HEPCGN_04705 0.72 +0.3
819,933 - znuC HEPCGN_04705 0.72 -2.2
819,948 - znuC HEPCGN_04705 0.74 +1.3
820,021 + znuC HEPCGN_04705 0.83 +3.3
820,181 + +1.4
820,208 - +1.7
820,380 + znuA HEPCGN_04710 0.21 +0.8
820,409 + znuA HEPCGN_04710 0.24 +1.7
820,507 + znuA HEPCGN_04710 0.34 +1.6
820,721 - znuA HEPCGN_04710 0.56 +3.2
820,832 + znuA HEPCGN_04710 0.67 +2.5
820,832 + znuA HEPCGN_04710 0.67 +1.6
820,853 + znuA HEPCGN_04710 0.69 -0.2
820,859 + znuA HEPCGN_04710 0.70 +1.9
820,947 + znuA HEPCGN_04710 0.79 +1.7
820,947 + znuA HEPCGN_04710 0.79 +0.8
820,947 + znuA HEPCGN_04710 0.79 +1.8
820,948 - znuA HEPCGN_04710 0.79 +2.9
820,948 - znuA HEPCGN_04710 0.79 +0.2
821,171 + +2.8
821,171 + +2.8
821,237 - +4.1
821,260 + +2.3
821,261 - +1.5
821,294 + +0.5
821,362 - mepM HEPCGN_04715 0.14 +0.7
821,466 - mepM HEPCGN_04715 0.22 +2.4
821,466 - mepM HEPCGN_04715 0.22 +3.0
821,466 - mepM HEPCGN_04715 0.22 +1.6
821,511 - mepM HEPCGN_04715 0.25 +1.3
821,515 + mepM HEPCGN_04715 0.26 +1.7
821,521 + mepM HEPCGN_04715 0.26 +2.3
821,530 + mepM HEPCGN_04715 0.27 +4.2
821,531 - mepM HEPCGN_04715 0.27 +2.5
821,663 + mepM HEPCGN_04715 0.37 +0.8
821,671 + mepM HEPCGN_04715 0.38 +1.9
821,744 - mepM HEPCGN_04715 0.43 +2.3
821,815 + mepM HEPCGN_04715 0.48 +2.5
821,931 + mepM HEPCGN_04715 0.57 +2.8
821,932 - mepM HEPCGN_04715 0.57 +1.2
821,958 - mepM HEPCGN_04715 0.59 +2.0

Or see this region's nucleotide sequence