Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt araH and otsB are separated by 166 nucleotides otsB and otsA overlap by 26 nucleotides otsA and uspC are separated by 6 nucleotides
HEPCGN_04500: araH - arabinose ABC transporter permease AraH, at 782,400 to 783,386
araH
HEPCGN_04505: otsB - trehalose-phosphatase, at 783,553 to 784,353
otsB
HEPCGN_04510: otsA - alpha,alpha-trehalose-phosphate synthase, at 784,328 to 785,752
otsA
HEPCGN_04515: uspC - universal stress protein UspC, at 785,759 to 786,187
uspC
Position (kb) 784
785
786 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 783.489 kb on + strand at 783.489 kb on + strand at 783.493 kb on + strand at 783.493 kb on + strand at 783.493 kb on + strand at 783.493 kb on + strand at 783.494 kb on - strand at 783.494 kb on - strand at 783.494 kb on - strand at 783.494 kb on - strand at 783.494 kb on - strand at 783.503 kb on + strand at 783.595 kb on + strand at 783.672 kb on + strand, within otsB at 783.773 kb on - strand, within otsB at 783.999 kb on + strand, within otsB at 784.000 kb on - strand, within otsB at 784.345 kb on - strand at 784.345 kb on - strand at 784.345 kb on - strand at 784.347 kb on + strand at 784.348 kb on - strand at 784.348 kb on - strand at 784.510 kb on + strand, within otsA at 784.511 kb on - strand, within otsA at 784.511 kb on - strand, within otsA at 784.553 kb on + strand, within otsA at 784.554 kb on - strand, within otsA at 784.653 kb on + strand, within otsA at 784.705 kb on + strand, within otsA at 784.721 kb on + strand, within otsA at 784.835 kb on + strand, within otsA at 784.835 kb on + strand, within otsA at 784.949 kb on - strand, within otsA at 785.206 kb on + strand, within otsA at 785.247 kb on - strand, within otsA at 785.290 kb on + strand, within otsA at 785.297 kb on - strand, within otsA at 785.300 kb on + strand, within otsA at 785.301 kb on - strand, within otsA at 785.311 kb on - strand, within otsA at 785.523 kb on + strand, within otsA at 785.581 kb on + strand, within otsA at 785.582 kb on - strand, within otsA at 785.648 kb on - strand at 785.680 kb on - strand at 785.751 kb on - strand at 785.751 kb on - strand at 785.780 kb on + strand at 785.781 kb on - strand at 785.781 kb on - strand at 785.908 kb on + strand, within uspC at 785.909 kb on - strand, within uspC at 785.935 kb on + strand, within uspC at 786.080 kb on + strand, within uspC at 786.099 kb on - strand, within uspC at 786.112 kb on + strand, within uspC at 786.116 kb on + strand, within uspC at 786.173 kb on - strand at 786.179 kb on - strand at 786.180 kb on + strand at 786.180 kb on + strand at 786.181 kb on - strand at 786.181 kb on - strand at 786.181 kb on - strand at 786.181 kb on - strand at 786.635 kb on - strand at 786.666 kb on + strand at 786.667 kb on - strand at 786.737 kb on + strand at 786.737 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 783,489 + -0.1 783,489 + +1.4 783,493 + -0.8 783,493 + +0.5 783,493 + -2.0 783,493 + -1.2 783,494 - +0.3 783,494 - -1.3 783,494 - +1.8 783,494 - +0.1 783,494 - +3.6 783,503 + +1.3 783,595 + +0.2 783,672 + otsB HEPCGN_04505 0.15 -0.5 783,773 - otsB HEPCGN_04505 0.27 +1.1 783,999 + otsB HEPCGN_04505 0.56 +0.6 784,000 - otsB HEPCGN_04505 0.56 -0.2 784,345 - +1.2 784,345 - -1.1 784,345 - -0.5 784,347 + +0.2 784,348 - +0.3 784,348 - -0.2 784,510 + otsA HEPCGN_04510 0.13 -1.2 784,511 - otsA HEPCGN_04510 0.13 -2.4 784,511 - otsA HEPCGN_04510 0.13 -0.1 784,553 + otsA HEPCGN_04510 0.16 +0.3 784,554 - otsA HEPCGN_04510 0.16 -2.4 784,653 + otsA HEPCGN_04510 0.23 -0.0 784,705 + otsA HEPCGN_04510 0.26 -1.0 784,721 + otsA HEPCGN_04510 0.28 +1.1 784,835 + otsA HEPCGN_04510 0.36 +0.6 784,835 + otsA HEPCGN_04510 0.36 +0.4 784,949 - otsA HEPCGN_04510 0.44 +2.4 785,206 + otsA HEPCGN_04510 0.62 +1.8 785,247 - otsA HEPCGN_04510 0.64 +0.6 785,290 + otsA HEPCGN_04510 0.68 +1.1 785,297 - otsA HEPCGN_04510 0.68 -0.0 785,300 + otsA HEPCGN_04510 0.68 -0.1 785,301 - otsA HEPCGN_04510 0.68 -1.2 785,311 - otsA HEPCGN_04510 0.69 +0.2 785,523 + otsA HEPCGN_04510 0.84 +1.8 785,581 + otsA HEPCGN_04510 0.88 +0.5 785,582 - otsA HEPCGN_04510 0.88 -1.5 785,648 - +0.2 785,680 - -0.4 785,751 - +0.8 785,751 - -1.0 785,780 + +0.8 785,781 - +1.8 785,781 - -1.0 785,908 + uspC HEPCGN_04515 0.35 -0.6 785,909 - uspC HEPCGN_04515 0.35 -0.5 785,935 + uspC HEPCGN_04515 0.41 +1.3 786,080 + uspC HEPCGN_04515 0.75 -3.0 786,099 - uspC HEPCGN_04515 0.79 +0.5 786,112 + uspC HEPCGN_04515 0.82 -1.6 786,116 + uspC HEPCGN_04515 0.83 -0.8 786,173 - +0.6 786,179 - -2.4 786,180 + -1.9 786,180 + +0.1 786,181 - -0.4 786,181 - +0.2 786,181 - -0.8 786,181 - -0.3 786,635 - -0.7 786,666 + -1.1 786,667 - -1.6 786,737 + +0.2 786,737 + -0.1
Or see this region's nucleotide sequence