Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yeeO and Asn_trna are separated by 100 nucleotides Asn_trna and ycdB are separated by 440 nucleotides ycdB and amn are separated by 342 nucleotides
HEPCGN_03500: yeeO - toxic metabolite efflux MATE transporter YeeO, at 603,580 to 605,034
yeeO
HEPCGN_03505: Asn_trna - tRNA-Asn(gtt), at 605,135 to 605,210
_trna
HEPCGN_03510: ycdB - putative transcriptional regulatory protein YcdB, at 605,651 to 606,367
ycdB
HEPCGN_03515: amn - AMP nucleosidase, at 606,710 to 608,164
amn
Position (kb) 605
606
607 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 604.737 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.741 kb on - strand, within yeeO at 604.858 kb on + strand, within yeeO at 605.033 kb on - strand at 605.273 kb on + strand at 605.401 kb on + strand at 605.406 kb on + strand at 605.431 kb on + strand at 605.442 kb on + strand at 605.442 kb on + strand at 605.442 kb on + strand at 605.649 kb on - strand at 605.649 kb on - strand at 605.833 kb on + strand, within ycdB at 605.870 kb on - strand, within ycdB at 605.982 kb on + strand, within ycdB at 606.085 kb on + strand, within ycdB at 606.085 kb on + strand, within ycdB at 606.101 kb on - strand, within ycdB at 606.358 kb on + strand at 606.358 kb on + strand at 606.708 kb on + strand at 606.820 kb on + strand at 606.831 kb on + strand at 606.860 kb on - strand, within amn at 606.873 kb on - strand, within amn at 607.010 kb on + strand, within amn at 607.011 kb on - strand, within amn at 607.046 kb on - strand, within amn at 607.046 kb on - strand, within amn at 607.046 kb on - strand, within amn at 607.094 kb on + strand, within amn at 607.213 kb on - strand, within amn at 607.213 kb on - strand, within amn
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 604,737 - yeeO HEPCGN_03500 0.80 -0.1 604,741 - yeeO HEPCGN_03500 0.80 -1.0 604,741 - yeeO HEPCGN_03500 0.80 +0.2 604,741 - yeeO HEPCGN_03500 0.80 -0.6 604,858 + yeeO HEPCGN_03500 0.88 +0.1 605,033 - -0.5 605,273 + -1.0 605,401 + -0.4 605,406 + +0.8 605,431 + -0.7 605,442 + +0.9 605,442 + -0.8 605,442 + -0.8 605,649 - -1.5 605,649 - -1.1 605,833 + ycdB HEPCGN_03510 0.25 -0.5 605,870 - ycdB HEPCGN_03510 0.31 +1.1 605,982 + ycdB HEPCGN_03510 0.46 -1.8 606,085 + ycdB HEPCGN_03510 0.61 +0.8 606,085 + ycdB HEPCGN_03510 0.61 -0.5 606,101 - ycdB HEPCGN_03510 0.63 -0.8 606,358 + -1.0 606,358 + -0.5 606,708 + +1.6 606,820 + +0.5 606,831 + -1.0 606,860 - amn HEPCGN_03515 0.10 +0.9 606,873 - amn HEPCGN_03515 0.11 +0.0 607,010 + amn HEPCGN_03515 0.21 -1.5 607,011 - amn HEPCGN_03515 0.21 +3.6 607,046 - amn HEPCGN_03515 0.23 -0.3 607,046 - amn HEPCGN_03515 0.23 +0.2 607,046 - amn HEPCGN_03515 0.23 +2.4 607,094 + amn HEPCGN_03515 0.26 +2.8 607,213 - amn HEPCGN_03515 0.35 -0.1 607,213 - amn HEPCGN_03515 0.35 -0.2
Or see this region's nucleotide sequence