Strain Fitness in Escherichia coli ECOR38 around HEPCGN_02295

Experiment: TP7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHEPCGN_02285 and HEPCGN_02290 are separated by 10 nucleotidesHEPCGN_02290 and HEPCGN_02295 are separated by 1 nucleotidesHEPCGN_02295 and HEPCGN_02300 overlap by 4 nucleotidesHEPCGN_02300 and HEPCGN_02305 overlap by 14 nucleotidesHEPCGN_02305 and HEPCGN_02310 overlap by 47 nucleotides HEPCGN_02285: HEPCGN_02285 - DUF551 domain-containing protein, at 379,920 to 380,681 _02285 HEPCGN_02290: HEPCGN_02290 - hypothetical protein, at 380,692 to 380,955 _02290 HEPCGN_02295: HEPCGN_02295 - Ead/Ea22-like protein, at 380,957 to 381,493 _02295 HEPCGN_02300: HEPCGN_02300 - ead/Ea22-like family protein, at 381,490 to 382,176 _02300 HEPCGN_02305: HEPCGN_02305 - hypothetical protein, at 382,163 to 382,477 _02305 HEPCGN_02310: HEPCGN_02310 - DUF4752 domain-containing protein, at 382,431 to 382,748 _02310 Position (kb) 380 381 382Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 379.961 kb on + strandat 380.036 kb on + strand, within HEPCGN_02285at 380.036 kb on + strand, within HEPCGN_02285at 380.063 kb on - strand, within HEPCGN_02285at 380.063 kb on - strand, within HEPCGN_02285at 380.069 kb on + strand, within HEPCGN_02285at 380.353 kb on + strand, within HEPCGN_02285at 380.354 kb on - strand, within HEPCGN_02285at 380.445 kb on + strand, within HEPCGN_02285at 380.489 kb on - strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.490 kb on + strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.491 kb on - strand, within HEPCGN_02285at 380.494 kb on + strand, within HEPCGN_02285at 380.670 kb on - strandat 380.670 kb on - strandat 380.686 kb on + strandat 380.755 kb on - strand, within HEPCGN_02290at 380.834 kb on + strand, within HEPCGN_02290at 380.840 kb on + strand, within HEPCGN_02290at 380.840 kb on + strand, within HEPCGN_02290at 380.955 kb on + strandat 380.991 kb on - strandat 381.042 kb on - strand, within HEPCGN_02295at 381.157 kb on + strand, within HEPCGN_02295at 381.158 kb on - strand, within HEPCGN_02295at 381.158 kb on - strand, within HEPCGN_02295at 381.169 kb on - strand, within HEPCGN_02295at 381.276 kb on + strand, within HEPCGN_02295at 381.277 kb on - strand, within HEPCGN_02295at 381.379 kb on + strand, within HEPCGN_02295at 381.395 kb on + strand, within HEPCGN_02295at 381.422 kb on + strand, within HEPCGN_02295at 381.423 kb on - strand, within HEPCGN_02295at 381.477 kb on + strandat 381.481 kb on + strandat 381.532 kb on + strandat 381.559 kb on + strand, within HEPCGN_02300at 381.617 kb on + strand, within HEPCGN_02300at 381.617 kb on + strand, within HEPCGN_02300at 381.623 kb on + strand, within HEPCGN_02300at 381.655 kb on + strand, within HEPCGN_02300at 381.656 kb on - strand, within HEPCGN_02300at 381.722 kb on - strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.778 kb on + strand, within HEPCGN_02300at 381.811 kb on - strand, within HEPCGN_02300at 381.839 kb on - strand, within HEPCGN_02300at 381.980 kb on + strand, within HEPCGN_02300at 382.079 kb on + strand, within HEPCGN_02300at 382.101 kb on + strand, within HEPCGN_02300at 382.104 kb on + strand, within HEPCGN_02300at 382.104 kb on + strand, within HEPCGN_02300at 382.105 kb on - strand, within HEPCGN_02300at 382.105 kb on - strand, within HEPCGN_02300at 382.106 kb on + strand, within HEPCGN_02300at 382.107 kb on - strand, within HEPCGN_02300at 382.260 kb on + strand, within HEPCGN_02305at 382.261 kb on - strand, within HEPCGN_02305at 382.286 kb on - strand, within HEPCGN_02305at 382.393 kb on - strand, within HEPCGN_02305at 382.441 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP7
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379,961 + +0.1
380,036 + HEPCGN_02285 0.15 +0.8
380,036 + HEPCGN_02285 0.15 -0.1
380,063 - HEPCGN_02285 0.19 -1.4
380,063 - HEPCGN_02285 0.19 +0.3
380,069 + HEPCGN_02285 0.20 +0.1
380,353 + HEPCGN_02285 0.57 +0.9
380,354 - HEPCGN_02285 0.57 +0.3
380,445 + HEPCGN_02285 0.69 -2.3
380,489 - HEPCGN_02285 0.75 +0.0
380,490 + HEPCGN_02285 0.75 -1.6
380,490 + HEPCGN_02285 0.75 -0.7
380,490 + HEPCGN_02285 0.75 -1.0
380,490 + HEPCGN_02285 0.75 +1.1
380,490 + HEPCGN_02285 0.75 +0.8
380,491 - HEPCGN_02285 0.75 +0.2
380,491 - HEPCGN_02285 0.75 -0.1
380,491 - HEPCGN_02285 0.75 -2.5
380,491 - HEPCGN_02285 0.75 -0.3
380,491 - HEPCGN_02285 0.75 +0.1
380,491 - HEPCGN_02285 0.75 -1.7
380,491 - HEPCGN_02285 0.75 +0.0
380,494 + HEPCGN_02285 0.75 -0.6
380,670 - -2.8
380,670 - -1.8
380,686 + -0.0
380,755 - HEPCGN_02290 0.24 -1.3
380,834 + HEPCGN_02290 0.54 -1.1
380,840 + HEPCGN_02290 0.56 +0.1
380,840 + HEPCGN_02290 0.56 +0.7
380,955 + +0.3
380,991 - +1.9
381,042 - HEPCGN_02295 0.16 +0.9
381,157 + HEPCGN_02295 0.37 +0.3
381,158 - HEPCGN_02295 0.37 -1.5
381,158 - HEPCGN_02295 0.37 -0.9
381,169 - HEPCGN_02295 0.39 -0.9
381,276 + HEPCGN_02295 0.59 +0.9
381,277 - HEPCGN_02295 0.60 -1.7
381,379 + HEPCGN_02295 0.79 +0.1
381,395 + HEPCGN_02295 0.82 -2.7
381,422 + HEPCGN_02295 0.87 -0.9
381,423 - HEPCGN_02295 0.87 -1.7
381,477 + +1.6
381,481 + -0.1
381,532 + +0.7
381,559 + HEPCGN_02300 0.10 +1.1
381,617 + HEPCGN_02300 0.18 +0.0
381,617 + HEPCGN_02300 0.18 -0.3
381,623 + HEPCGN_02300 0.19 -0.3
381,655 + HEPCGN_02300 0.24 -2.6
381,656 - HEPCGN_02300 0.24 -1.4
381,722 - HEPCGN_02300 0.34 -0.3
381,778 + HEPCGN_02300 0.42 +0.2
381,778 + HEPCGN_02300 0.42 -1.6
381,778 + HEPCGN_02300 0.42 -0.2
381,811 - HEPCGN_02300 0.47 -0.9
381,839 - HEPCGN_02300 0.51 -0.4
381,980 + HEPCGN_02300 0.71 -0.3
382,079 + HEPCGN_02300 0.86 +0.3
382,101 + HEPCGN_02300 0.89 -0.9
382,104 + HEPCGN_02300 0.89 +0.3
382,104 + HEPCGN_02300 0.89 +0.8
382,105 - HEPCGN_02300 0.90 -1.0
382,105 - HEPCGN_02300 0.90 -2.0
382,106 + HEPCGN_02300 0.90 -1.6
382,107 - HEPCGN_02300 0.90 -2.6
382,260 + HEPCGN_02305 0.31 +1.8
382,261 - HEPCGN_02305 0.31 +1.9
382,286 - HEPCGN_02305 0.39 +0.9
382,393 - HEPCGN_02305 0.73 +0.3
382,441 - -0.1

Or see this region's nucleotide sequence