Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gsiB and gsiC are separated by 17 nucleotides gsiC and gsiD are separated by 2 nucleotides gsiD and pdeI are separated by 177 nucleotides
HEPCGN_01935: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 313,045 to 314,583
gsiB
HEPCGN_01940: gsiC - glutathione ABC transporter permease GsiC, at 314,601 to 315,521
gsiC
HEPCGN_01945: gsiD - glutathione ABC transporter permease GsiD, at 315,524 to 316,435
gsiD
HEPCGN_01950: pdeI - putative cyclic di-GMP phosphodiesterase PdeI, at 316,613 to 318,961
pdeI
Position (kb) 315
316
317 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 314.607 kb on - strand at 314.607 kb on - strand at 314.611 kb on - strand at 314.674 kb on + strand at 314.684 kb on + strand at 314.743 kb on + strand, within gsiC at 314.744 kb on - strand, within gsiC at 314.802 kb on + strand, within gsiC at 314.803 kb on - strand, within gsiC at 314.803 kb on - strand, within gsiC at 314.805 kb on - strand, within gsiC at 314.885 kb on + strand, within gsiC at 314.933 kb on - strand, within gsiC at 314.955 kb on - strand, within gsiC at 314.973 kb on - strand, within gsiC at 314.997 kb on - strand, within gsiC at 315.052 kb on + strand, within gsiC at 315.061 kb on + strand, within gsiC at 315.210 kb on + strand, within gsiC at 315.210 kb on + strand, within gsiC at 315.211 kb on - strand, within gsiC at 315.212 kb on + strand, within gsiC at 315.212 kb on + strand, within gsiC at 315.213 kb on - strand, within gsiC at 315.311 kb on - strand, within gsiC at 315.311 kb on - strand, within gsiC at 315.397 kb on + strand, within gsiC at 315.514 kb on - strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.531 kb on + strand at 315.591 kb on + strand at 315.592 kb on - strand at 315.595 kb on + strand at 315.596 kb on - strand at 315.596 kb on - strand at 315.725 kb on + strand, within gsiD at 315.906 kb on - strand, within gsiD at 316.162 kb on + strand, within gsiD at 316.163 kb on - strand, within gsiD at 316.163 kb on - strand, within gsiD at 316.186 kb on + strand, within gsiD at 316.437 kb on + strand at 316.437 kb on + strand at 316.437 kb on + strand at 316.642 kb on - strand at 316.827 kb on + strand at 317.080 kb on + strand, within pdeI at 317.080 kb on + strand, within pdeI at 317.135 kb on - strand, within pdeI at 317.350 kb on + strand, within pdeI
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 314,607 - +0.3 314,607 - +0.9 314,611 - +0.3 314,674 + +0.4 314,684 + +0.1 314,743 + gsiC HEPCGN_01940 0.15 +0.4 314,744 - gsiC HEPCGN_01940 0.16 -0.8 314,802 + gsiC HEPCGN_01940 0.22 +1.1 314,803 - gsiC HEPCGN_01940 0.22 -0.4 314,803 - gsiC HEPCGN_01940 0.22 +0.3 314,805 - gsiC HEPCGN_01940 0.22 -0.5 314,885 + gsiC HEPCGN_01940 0.31 +0.5 314,933 - gsiC HEPCGN_01940 0.36 -0.2 314,955 - gsiC HEPCGN_01940 0.38 +0.2 314,973 - gsiC HEPCGN_01940 0.40 +0.5 314,997 - gsiC HEPCGN_01940 0.43 +1.7 315,052 + gsiC HEPCGN_01940 0.49 +1.3 315,061 + gsiC HEPCGN_01940 0.50 -0.9 315,210 + gsiC HEPCGN_01940 0.66 -0.1 315,210 + gsiC HEPCGN_01940 0.66 +0.9 315,211 - gsiC HEPCGN_01940 0.66 -1.1 315,212 + gsiC HEPCGN_01940 0.66 -0.3 315,212 + gsiC HEPCGN_01940 0.66 -3.0 315,213 - gsiC HEPCGN_01940 0.66 +1.2 315,311 - gsiC HEPCGN_01940 0.77 +0.2 315,311 - gsiC HEPCGN_01940 0.77 -0.7 315,397 + gsiC HEPCGN_01940 0.86 +1.1 315,514 - -2.4 315,519 + -0.3 315,519 + +0.1 315,519 + +0.4 315,519 + +1.5 315,531 + +2.2 315,591 + +0.9 315,592 - -1.4 315,595 + +0.6 315,596 - +0.8 315,596 - -1.7 315,725 + gsiD HEPCGN_01945 0.22 +0.9 315,906 - gsiD HEPCGN_01945 0.42 +0.9 316,162 + gsiD HEPCGN_01945 0.70 +0.3 316,163 - gsiD HEPCGN_01945 0.70 -0.4 316,163 - gsiD HEPCGN_01945 0.70 -0.7 316,186 + gsiD HEPCGN_01945 0.73 +0.9 316,437 + +0.3 316,437 + -0.7 316,437 + +0.3 316,642 - +2.4 316,827 + -1.0 317,080 + pdeI HEPCGN_01950 0.20 +0.6 317,080 + pdeI HEPCGN_01950 0.20 -1.4 317,135 - pdeI HEPCGN_01950 0.22 +0.9 317,350 + pdeI HEPCGN_01950 0.31 -0.9
Or see this region's nucleotide sequence