Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gsiA and gsiB are separated by 19 nucleotides gsiB and gsiC are separated by 17 nucleotides gsiC and gsiD are separated by 2 nucleotides
HEPCGN_01930: gsiA - glutathione ABC transporter ATP-binding protein GsiA, at 311,154 to 313,025
gsiA
HEPCGN_01935: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 313,045 to 314,583
gsiB
HEPCGN_01940: gsiC - glutathione ABC transporter permease GsiC, at 314,601 to 315,521
gsiC
HEPCGN_01945: gsiD - glutathione ABC transporter permease GsiD, at 315,524 to 316,435
gsiD
Position (kb) 313
314
315 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 312.104 kb on + strand, within gsiA at 312.105 kb on - strand, within gsiA at 312.452 kb on - strand, within gsiA at 312.461 kb on + strand, within gsiA at 312.703 kb on - strand, within gsiA at 312.710 kb on + strand, within gsiA at 312.893 kb on - strand at 312.920 kb on + strand at 312.947 kb on - strand at 312.982 kb on - strand at 312.982 kb on - strand at 313.019 kb on + strand at 313.020 kb on - strand at 313.058 kb on + strand at 313.058 kb on + strand at 313.059 kb on - strand at 313.145 kb on + strand at 313.280 kb on - strand, within gsiB at 313.302 kb on + strand, within gsiB at 313.302 kb on + strand, within gsiB at 313.302 kb on + strand, within gsiB at 313.303 kb on - strand, within gsiB at 313.307 kb on - strand, within gsiB at 313.307 kb on - strand, within gsiB at 313.332 kb on + strand, within gsiB at 313.413 kb on + strand, within gsiB at 313.420 kb on + strand, within gsiB at 313.430 kb on - strand, within gsiB at 313.437 kb on + strand, within gsiB at 313.512 kb on + strand, within gsiB at 313.697 kb on + strand, within gsiB at 313.698 kb on - strand, within gsiB at 313.742 kb on + strand, within gsiB at 313.742 kb on + strand, within gsiB at 313.742 kb on + strand, within gsiB at 313.780 kb on + strand, within gsiB at 313.842 kb on + strand, within gsiB at 313.843 kb on - strand, within gsiB at 313.852 kb on + strand, within gsiB at 313.853 kb on - strand, within gsiB at 313.853 kb on - strand, within gsiB at 313.854 kb on + strand, within gsiB at 313.855 kb on - strand, within gsiB at 313.861 kb on - strand, within gsiB at 313.961 kb on - strand, within gsiB at 313.961 kb on - strand, within gsiB at 313.974 kb on + strand, within gsiB at 313.974 kb on + strand, within gsiB at 313.974 kb on + strand, within gsiB at 313.975 kb on - strand, within gsiB at 313.975 kb on - strand, within gsiB at 314.029 kb on + strand, within gsiB at 314.156 kb on + strand, within gsiB at 314.156 kb on + strand, within gsiB at 314.346 kb on + strand, within gsiB at 314.368 kb on - strand, within gsiB at 314.433 kb on - strand at 314.434 kb on + strand at 314.435 kb on - strand at 314.435 kb on - strand at 314.436 kb on + strand at 314.437 kb on - strand at 314.452 kb on - strand at 314.514 kb on + strand at 314.607 kb on - strand at 314.607 kb on - strand at 314.611 kb on - strand at 314.674 kb on + strand at 314.684 kb on + strand at 314.743 kb on + strand, within gsiC at 314.744 kb on - strand, within gsiC at 314.802 kb on + strand, within gsiC at 314.803 kb on - strand, within gsiC at 314.803 kb on - strand, within gsiC at 314.805 kb on - strand, within gsiC at 314.885 kb on + strand, within gsiC at 314.933 kb on - strand, within gsiC at 314.955 kb on - strand, within gsiC at 314.973 kb on - strand, within gsiC at 314.997 kb on - strand, within gsiC at 315.052 kb on + strand, within gsiC at 315.061 kb on + strand, within gsiC at 315.210 kb on + strand, within gsiC at 315.210 kb on + strand, within gsiC at 315.211 kb on - strand, within gsiC at 315.212 kb on + strand, within gsiC at 315.212 kb on + strand, within gsiC at 315.213 kb on - strand, within gsiC at 315.311 kb on - strand, within gsiC at 315.311 kb on - strand, within gsiC at 315.397 kb on + strand, within gsiC at 315.514 kb on - strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.519 kb on + strand at 315.531 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 312,104 + gsiA HEPCGN_01930 0.51 +0.1 312,105 - gsiA HEPCGN_01930 0.51 -2.1 312,452 - gsiA HEPCGN_01930 0.69 +0.8 312,461 + gsiA HEPCGN_01930 0.70 -0.6 312,703 - gsiA HEPCGN_01930 0.83 +2.1 312,710 + gsiA HEPCGN_01930 0.83 +0.4 312,893 - -0.6 312,920 + +0.3 312,947 - +0.5 312,982 - +1.3 312,982 - +0.9 313,019 + -0.2 313,020 - +0.9 313,058 + +1.0 313,058 + +0.9 313,059 - -1.0 313,145 + +0.7 313,280 - gsiB HEPCGN_01935 0.15 -0.9 313,302 + gsiB HEPCGN_01935 0.17 +0.2 313,302 + gsiB HEPCGN_01935 0.17 +0.0 313,302 + gsiB HEPCGN_01935 0.17 +0.2 313,303 - gsiB HEPCGN_01935 0.17 -2.1 313,307 - gsiB HEPCGN_01935 0.17 -0.5 313,307 - gsiB HEPCGN_01935 0.17 +0.1 313,332 + gsiB HEPCGN_01935 0.19 +0.2 313,413 + gsiB HEPCGN_01935 0.24 +1.1 313,420 + gsiB HEPCGN_01935 0.24 -0.1 313,430 - gsiB HEPCGN_01935 0.25 -0.3 313,437 + gsiB HEPCGN_01935 0.25 -0.4 313,512 + gsiB HEPCGN_01935 0.30 +0.2 313,697 + gsiB HEPCGN_01935 0.42 -1.9 313,698 - gsiB HEPCGN_01935 0.42 -0.4 313,742 + gsiB HEPCGN_01935 0.45 -0.5 313,742 + gsiB HEPCGN_01935 0.45 -1.9 313,742 + gsiB HEPCGN_01935 0.45 +0.6 313,780 + gsiB HEPCGN_01935 0.48 +1.2 313,842 + gsiB HEPCGN_01935 0.52 -2.1 313,843 - gsiB HEPCGN_01935 0.52 -0.4 313,852 + gsiB HEPCGN_01935 0.52 -1.6 313,853 - gsiB HEPCGN_01935 0.53 +1.2 313,853 - gsiB HEPCGN_01935 0.53 -0.1 313,854 + gsiB HEPCGN_01935 0.53 +0.6 313,855 - gsiB HEPCGN_01935 0.53 -1.1 313,861 - gsiB HEPCGN_01935 0.53 -0.4 313,961 - gsiB HEPCGN_01935 0.60 -0.9 313,961 - gsiB HEPCGN_01935 0.60 +0.3 313,974 + gsiB HEPCGN_01935 0.60 -0.4 313,974 + gsiB HEPCGN_01935 0.60 -0.5 313,974 + gsiB HEPCGN_01935 0.60 +0.0 313,975 - gsiB HEPCGN_01935 0.60 +2.9 313,975 - gsiB HEPCGN_01935 0.60 +0.7 314,029 + gsiB HEPCGN_01935 0.64 -0.3 314,156 + gsiB HEPCGN_01935 0.72 +0.4 314,156 + gsiB HEPCGN_01935 0.72 +0.2 314,346 + gsiB HEPCGN_01935 0.85 +0.4 314,368 - gsiB HEPCGN_01935 0.86 +0.2 314,433 - -3.0 314,434 + -1.0 314,435 - +0.2 314,435 - +1.4 314,436 + +0.2 314,437 - -1.6 314,452 - -0.6 314,514 + -0.9 314,607 - +0.3 314,607 - +0.9 314,611 - +0.3 314,674 + +0.4 314,684 + +0.1 314,743 + gsiC HEPCGN_01940 0.15 +0.4 314,744 - gsiC HEPCGN_01940 0.16 -0.8 314,802 + gsiC HEPCGN_01940 0.22 +1.1 314,803 - gsiC HEPCGN_01940 0.22 -0.4 314,803 - gsiC HEPCGN_01940 0.22 +0.3 314,805 - gsiC HEPCGN_01940 0.22 -0.5 314,885 + gsiC HEPCGN_01940 0.31 +0.5 314,933 - gsiC HEPCGN_01940 0.36 -0.2 314,955 - gsiC HEPCGN_01940 0.38 +0.2 314,973 - gsiC HEPCGN_01940 0.40 +0.5 314,997 - gsiC HEPCGN_01940 0.43 +1.7 315,052 + gsiC HEPCGN_01940 0.49 +1.3 315,061 + gsiC HEPCGN_01940 0.50 -0.9 315,210 + gsiC HEPCGN_01940 0.66 -0.1 315,210 + gsiC HEPCGN_01940 0.66 +0.9 315,211 - gsiC HEPCGN_01940 0.66 -1.1 315,212 + gsiC HEPCGN_01940 0.66 -0.3 315,212 + gsiC HEPCGN_01940 0.66 -3.0 315,213 - gsiC HEPCGN_01940 0.66 +1.2 315,311 - gsiC HEPCGN_01940 0.77 +0.2 315,311 - gsiC HEPCGN_01940 0.77 -0.7 315,397 + gsiC HEPCGN_01940 0.86 +1.1 315,514 - -2.4 315,519 + -0.3 315,519 + +0.1 315,519 + +0.4 315,519 + +1.5 315,531 + +2.2
Or see this region's nucleotide sequence