Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt uvrB and ybhK are separated by 37 nucleotides ybhK and moaA are separated by 396 nucleotides
HEPCGN_01660: uvrB - excinuclease ABC subunit UvrB, at 255,375 to 257,396
uvrB
HEPCGN_01665: ybhK - Putative gluconeogenesis factor, at 257,434 to 258,342
ybhK
HEPCGN_01670: moaA - GTP 3',8-cyclase MoaA, at 258,739 to 259,728
moaA
Position (kb) 257
258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 256.528 kb on + strand, within uvrB at 256.546 kb on - strand, within uvrB at 256.546 kb on - strand, within uvrB at 256.546 kb on - strand, within uvrB at 256.570 kb on - strand, within uvrB at 256.767 kb on + strand, within uvrB at 256.768 kb on - strand, within uvrB at 256.798 kb on - strand, within uvrB at 256.830 kb on - strand, within uvrB at 256.871 kb on - strand, within uvrB at 256.877 kb on - strand, within uvrB at 256.888 kb on + strand, within uvrB at 256.888 kb on + strand, within uvrB at 256.907 kb on + strand, within uvrB at 257.006 kb on + strand, within uvrB at 257.006 kb on + strand, within uvrB at 257.007 kb on - strand, within uvrB at 257.106 kb on + strand, within uvrB at 257.186 kb on + strand, within uvrB at 257.252 kb on + strand at 257.253 kb on - strand at 257.253 kb on - strand at 257.416 kb on + strand at 257.440 kb on + strand at 257.440 kb on + strand at 257.598 kb on + strand, within ybhK at 257.598 kb on + strand, within ybhK at 257.598 kb on + strand, within ybhK at 257.606 kb on + strand, within ybhK at 257.607 kb on - strand, within ybhK at 257.607 kb on - strand, within ybhK at 257.687 kb on + strand, within ybhK at 257.688 kb on - strand, within ybhK at 257.688 kb on - strand, within ybhK at 257.763 kb on - strand, within ybhK at 257.781 kb on + strand, within ybhK at 257.782 kb on - strand, within ybhK at 257.869 kb on - strand, within ybhK at 257.873 kb on - strand, within ybhK at 257.873 kb on - strand, within ybhK at 257.883 kb on + strand, within ybhK at 258.150 kb on + strand, within ybhK at 258.344 kb on + strand at 258.372 kb on + strand at 258.373 kb on - strand at 258.404 kb on + strand at 258.416 kb on - strand at 258.459 kb on + strand at 258.459 kb on + strand at 258.460 kb on - strand at 258.460 kb on - strand at 258.460 kb on - strand at 258.482 kb on + strand at 258.482 kb on + strand at 258.482 kb on + strand at 258.483 kb on - strand at 258.483 kb on - strand at 258.483 kb on - strand at 258.484 kb on + strand at 258.492 kb on + strand at 258.512 kb on - strand at 258.590 kb on + strand at 258.591 kb on - strand at 258.737 kb on - strand at 258.737 kb on - strand at 258.737 kb on - strand at 258.778 kb on + strand at 258.826 kb on + strand at 258.827 kb on - strand at 258.827 kb on - strand at 258.978 kb on + strand, within moaA at 259.246 kb on - strand, within moaA
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 256,528 + uvrB HEPCGN_01660 0.57 -0.7 256,546 - uvrB HEPCGN_01660 0.58 +1.0 256,546 - uvrB HEPCGN_01660 0.58 +0.4 256,546 - uvrB HEPCGN_01660 0.58 -1.0 256,570 - uvrB HEPCGN_01660 0.59 -0.2 256,767 + uvrB HEPCGN_01660 0.69 -0.8 256,768 - uvrB HEPCGN_01660 0.69 +0.2 256,798 - uvrB HEPCGN_01660 0.70 +0.1 256,830 - uvrB HEPCGN_01660 0.72 +0.7 256,871 - uvrB HEPCGN_01660 0.74 +1.1 256,877 - uvrB HEPCGN_01660 0.74 +0.1 256,888 + uvrB HEPCGN_01660 0.75 -1.2 256,888 + uvrB HEPCGN_01660 0.75 -0.1 256,907 + uvrB HEPCGN_01660 0.76 -0.8 257,006 + uvrB HEPCGN_01660 0.81 -1.3 257,006 + uvrB HEPCGN_01660 0.81 -2.9 257,007 - uvrB HEPCGN_01660 0.81 -1.0 257,106 + uvrB HEPCGN_01660 0.86 -0.4 257,186 + uvrB HEPCGN_01660 0.90 -0.8 257,252 + -1.2 257,253 - +1.0 257,253 - +1.2 257,416 + -2.6 257,440 + -2.8 257,440 + -0.5 257,598 + ybhK HEPCGN_01665 0.18 -1.5 257,598 + ybhK HEPCGN_01665 0.18 -1.1 257,598 + ybhK HEPCGN_01665 0.18 -1.9 257,606 + ybhK HEPCGN_01665 0.19 -1.4 257,607 - ybhK HEPCGN_01665 0.19 -3.4 257,607 - ybhK HEPCGN_01665 0.19 -2.8 257,687 + ybhK HEPCGN_01665 0.28 -2.1 257,688 - ybhK HEPCGN_01665 0.28 -0.9 257,688 - ybhK HEPCGN_01665 0.28 -1.6 257,763 - ybhK HEPCGN_01665 0.36 -0.8 257,781 + ybhK HEPCGN_01665 0.38 +0.4 257,782 - ybhK HEPCGN_01665 0.38 -1.6 257,869 - ybhK HEPCGN_01665 0.48 -0.6 257,873 - ybhK HEPCGN_01665 0.48 -1.0 257,873 - ybhK HEPCGN_01665 0.48 -0.8 257,883 + ybhK HEPCGN_01665 0.49 -1.0 258,150 + ybhK HEPCGN_01665 0.79 -0.4 258,344 + +0.5 258,372 + -1.0 258,373 - -1.5 258,404 + -2.5 258,416 - -0.7 258,459 + +0.2 258,459 + -1.8 258,460 - +0.4 258,460 - -0.0 258,460 - +0.7 258,482 + -0.4 258,482 + +1.0 258,482 + -0.1 258,483 - +1.3 258,483 - -1.7 258,483 - -0.2 258,484 + +0.4 258,492 + -0.2 258,512 - +1.7 258,590 + +1.1 258,591 - -0.2 258,737 - -0.0 258,737 - -0.9 258,737 - -0.6 258,778 + -0.2 258,826 + -0.2 258,827 - -0.4 258,827 - +0.6 258,978 + moaA HEPCGN_01670 0.24 -1.8 259,246 - moaA HEPCGN_01670 0.51 -0.1
Or see this region's nucleotide sequence