Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acnA and ybhC are separated by 70 nucleotides ybhC and ybhB are separated by 151 nucleotides ybhB and bioA are separated by 58 nucleotides
HEPCGN_01620: acnA - hydratase, at 245,752 to 247,776
acnA
HEPCGN_01625: ybhC - putative acyl-CoA thioester hydrolase, at 247,847 to 249,130
ybhC
HEPCGN_01630: ybhB - kinase inhibitor, at 249,282 to 249,758
ybhB
HEPCGN_01635: bioA - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 249,817 to 251,106
bioA
Position (kb) 247
248
249
250 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.951 kb on - strand, within acnA at 246.951 kb on - strand, within acnA at 247.122 kb on + strand, within acnA at 247.123 kb on - strand, within acnA at 247.261 kb on + strand, within acnA at 247.261 kb on + strand, within acnA at 247.275 kb on + strand, within acnA at 247.375 kb on - strand, within acnA at 247.375 kb on - strand, within acnA at 247.501 kb on + strand, within acnA at 247.584 kb on - strand at 247.591 kb on + strand at 247.591 kb on + strand at 247.592 kb on - strand at 247.592 kb on - strand at 247.598 kb on - strand at 247.598 kb on - strand at 247.611 kb on + strand at 247.652 kb on - strand at 247.693 kb on + strand at 247.693 kb on + strand at 247.693 kb on + strand at 247.694 kb on - strand at 247.695 kb on + strand at 247.749 kb on + strand at 247.794 kb on + strand at 247.794 kb on + strand at 247.795 kb on - strand at 247.795 kb on - strand at 247.848 kb on + strand at 247.897 kb on - strand at 247.897 kb on - strand at 247.914 kb on + strand at 247.915 kb on - strand at 247.915 kb on - strand at 248.060 kb on + strand, within ybhC at 248.061 kb on - strand, within ybhC at 248.075 kb on - strand, within ybhC at 248.197 kb on - strand, within ybhC at 248.293 kb on + strand, within ybhC at 248.429 kb on - strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.462 kb on + strand, within ybhC at 248.463 kb on - strand, within ybhC at 248.463 kb on - strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.586 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.590 kb on + strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.591 kb on - strand, within ybhC at 248.592 kb on + strand, within ybhC at 248.593 kb on - strand, within ybhC at 248.617 kb on - strand, within ybhC at 248.713 kb on + strand, within ybhC at 248.718 kb on + strand, within ybhC at 248.726 kb on - strand, within ybhC at 248.726 kb on - strand, within ybhC at 248.751 kb on + strand, within ybhC at 248.751 kb on + strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.752 kb on - strand, within ybhC at 248.789 kb on - strand, within ybhC at 248.806 kb on + strand, within ybhC at 248.807 kb on - strand, within ybhC at 248.807 kb on - strand, within ybhC at 248.855 kb on + strand, within ybhC at 248.856 kb on - strand, within ybhC at 249.017 kb on - strand at 249.065 kb on - strand at 249.190 kb on - strand at 249.190 kb on - strand at 249.211 kb on + strand at 249.237 kb on - strand at 249.242 kb on + strand at 249.243 kb on - strand at 249.284 kb on - strand at 249.287 kb on + strand at 249.287 kb on + strand at 249.300 kb on - strand at 249.377 kb on + strand, within ybhB at 249.377 kb on + strand, within ybhB at 249.377 kb on + strand, within ybhB at 249.378 kb on - strand, within ybhB at 249.378 kb on - strand, within ybhB at 249.378 kb on - strand, within ybhB at 249.384 kb on + strand, within ybhB at 249.462 kb on - strand, within ybhB at 249.473 kb on + strand, within ybhB at 249.564 kb on + strand, within ybhB at 249.565 kb on - strand, within ybhB at 249.671 kb on + strand, within ybhB at 249.744 kb on - strand at 249.894 kb on + strand at 249.895 kb on - strand at 249.895 kb on - strand at 249.895 kb on - strand at 249.899 kb on + strand at 249.899 kb on + strand at 250.084 kb on + strand, within bioA
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 246,951 - acnA HEPCGN_01620 0.59 -1.8 246,951 - acnA HEPCGN_01620 0.59 -2.0 247,122 + acnA HEPCGN_01620 0.68 -0.2 247,123 - acnA HEPCGN_01620 0.68 -0.0 247,261 + acnA HEPCGN_01620 0.75 -2.4 247,261 + acnA HEPCGN_01620 0.75 -0.4 247,275 + acnA HEPCGN_01620 0.75 +0.4 247,375 - acnA HEPCGN_01620 0.80 -1.3 247,375 - acnA HEPCGN_01620 0.80 -0.5 247,501 + acnA HEPCGN_01620 0.86 +0.5 247,584 - -1.3 247,591 + +0.7 247,591 + +0.7 247,592 - +0.2 247,592 - +0.6 247,598 - -0.5 247,598 - -1.7 247,611 + +0.1 247,652 - -0.9 247,693 + -0.4 247,693 + -0.2 247,693 + +0.6 247,694 - -0.3 247,695 + -1.9 247,749 + -0.3 247,794 + +2.0 247,794 + +2.0 247,795 - -1.5 247,795 - -0.6 247,848 + +0.8 247,897 - +0.6 247,897 - +1.5 247,914 + +1.4 247,915 - +1.6 247,915 - +2.7 248,060 + ybhC HEPCGN_01625 0.17 +2.7 248,061 - ybhC HEPCGN_01625 0.17 +1.5 248,075 - ybhC HEPCGN_01625 0.18 +2.8 248,197 - ybhC HEPCGN_01625 0.27 +2.2 248,293 + ybhC HEPCGN_01625 0.35 +1.6 248,429 - ybhC HEPCGN_01625 0.45 +1.1 248,462 + ybhC HEPCGN_01625 0.48 +1.4 248,462 + ybhC HEPCGN_01625 0.48 +0.7 248,462 + ybhC HEPCGN_01625 0.48 +1.9 248,463 - ybhC HEPCGN_01625 0.48 +1.4 248,463 - ybhC HEPCGN_01625 0.48 +1.4 248,586 + ybhC HEPCGN_01625 0.58 +0.7 248,586 + ybhC HEPCGN_01625 0.58 +3.7 248,586 + ybhC HEPCGN_01625 0.58 +0.3 248,590 + ybhC HEPCGN_01625 0.58 +0.1 248,590 + ybhC HEPCGN_01625 0.58 +1.4 248,590 + ybhC HEPCGN_01625 0.58 +2.0 248,591 - ybhC HEPCGN_01625 0.58 +2.7 248,591 - ybhC HEPCGN_01625 0.58 +1.5 248,591 - ybhC HEPCGN_01625 0.58 +1.8 248,592 + ybhC HEPCGN_01625 0.58 +1.5 248,593 - ybhC HEPCGN_01625 0.58 +0.8 248,617 - ybhC HEPCGN_01625 0.60 +2.1 248,713 + ybhC HEPCGN_01625 0.67 +1.0 248,718 + ybhC HEPCGN_01625 0.68 +2.1 248,726 - ybhC HEPCGN_01625 0.68 +2.2 248,726 - ybhC HEPCGN_01625 0.68 +1.0 248,751 + ybhC HEPCGN_01625 0.70 +1.5 248,751 + ybhC HEPCGN_01625 0.70 +1.3 248,752 - ybhC HEPCGN_01625 0.70 +1.4 248,752 - ybhC HEPCGN_01625 0.70 +2.2 248,752 - ybhC HEPCGN_01625 0.70 +2.9 248,752 - ybhC HEPCGN_01625 0.70 +1.8 248,789 - ybhC HEPCGN_01625 0.73 +1.7 248,806 + ybhC HEPCGN_01625 0.75 +2.8 248,807 - ybhC HEPCGN_01625 0.75 +1.6 248,807 - ybhC HEPCGN_01625 0.75 +1.8 248,855 + ybhC HEPCGN_01625 0.79 +0.6 248,856 - ybhC HEPCGN_01625 0.79 +1.2 249,017 - +2.1 249,065 - +1.6 249,190 - +1.1 249,190 - +2.7 249,211 + +1.2 249,237 - +0.1 249,242 + -1.5 249,243 - -0.7 249,284 - +0.1 249,287 + +1.5 249,287 + +0.3 249,300 - -0.2 249,377 + ybhB HEPCGN_01630 0.20 -1.2 249,377 + ybhB HEPCGN_01630 0.20 +1.3 249,377 + ybhB HEPCGN_01630 0.20 -0.6 249,378 - ybhB HEPCGN_01630 0.20 +1.6 249,378 - ybhB HEPCGN_01630 0.20 +0.4 249,378 - ybhB HEPCGN_01630 0.20 +2.3 249,384 + ybhB HEPCGN_01630 0.21 -1.7 249,462 - ybhB HEPCGN_01630 0.38 +1.6 249,473 + ybhB HEPCGN_01630 0.40 +0.0 249,564 + ybhB HEPCGN_01630 0.59 -0.6 249,565 - ybhB HEPCGN_01630 0.59 +0.7 249,671 + ybhB HEPCGN_01630 0.82 -1.1 249,744 - -0.6 249,894 + +0.2 249,895 - +1.2 249,895 - +0.1 249,895 - -0.4 249,899 + -0.0 249,899 + +0.6 250,084 + bioA HEPCGN_01635 0.21 -0.3
Or see this region's nucleotide sequence