Experiment: TP7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt acrZ and modA are separated by 166 nucleotides modA and modB overlap by 1 nucleotides modB and modC are separated by 2 nucleotides
HEPCGN_01575: acrZ - multidrug efflux pump accessory protein AcrZ, at 239,002 to 239,151
acrZ
HEPCGN_01580: modA - molybdate ABC transporter substrate-binding protein, at 239,318 to 240,091
modA
HEPCGN_01585: modB - molybdate ABC transporter permease subunit, at 240,091 to 240,780
modB
HEPCGN_01590: modC - molybdenum ABC transporter ATP-binding protein ModC, at 240,783 to 241,841
modC
Position (kb) 240
241 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 239.096 kb on + strand, within acrZ at 239.228 kb on + strand at 239.228 kb on + strand at 239.243 kb on - strand at 239.248 kb on + strand at 239.295 kb on - strand at 239.326 kb on + strand at 239.460 kb on - strand, within modA at 239.510 kb on - strand, within modA at 239.638 kb on + strand, within modA at 239.772 kb on - strand, within modA at 240.001 kb on + strand, within modA at 240.032 kb on + strand at 240.080 kb on - strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.089 kb on + strand at 240.090 kb on - strand at 240.125 kb on + strand at 240.195 kb on - strand, within modB at 240.200 kb on + strand, within modB at 240.200 kb on + strand, within modB at 240.201 kb on - strand, within modB at 240.240 kb on - strand, within modB at 240.248 kb on + strand, within modB at 240.249 kb on - strand, within modB at 240.284 kb on + strand, within modB at 240.284 kb on + strand, within modB at 240.285 kb on - strand, within modB at 240.285 kb on - strand, within modB at 240.360 kb on + strand, within modB at 240.511 kb on - strand, within modB at 240.538 kb on - strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.642 kb on + strand, within modB at 240.643 kb on - strand, within modB at 240.646 kb on + strand, within modB at 240.646 kb on + strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.647 kb on - strand, within modB at 240.648 kb on + strand, within modB at 240.696 kb on + strand, within modB at 240.699 kb on + strand, within modB at 240.699 kb on + strand, within modB at 240.700 kb on - strand, within modB at 240.967 kb on + strand, within modC at 240.967 kb on + strand, within modC at 241.015 kb on + strand, within modC at 241.021 kb on - strand, within modC at 241.291 kb on - strand, within modC at 241.332 kb on + strand, within modC at 241.332 kb on + strand, within modC at 241.332 kb on + strand, within modC at 241.333 kb on - strand, within modC at 241.498 kb on + strand, within modC at 241.499 kb on - strand, within modC at 241.565 kb on + strand, within modC at 241.667 kb on - strand, within modC at 241.686 kb on - strand, within modC at 241.688 kb on + strand, within modC at 241.688 kb on + strand, within modC at 241.688 kb on + strand, within modC at 241.693 kb on - strand, within modC
Per-strain Table
Position Strand Gene LocusTag Fraction TP7 remove 239,096 + acrZ HEPCGN_01575 0.63 -1.0 239,228 + -0.6 239,228 + +0.3 239,243 - -0.9 239,248 + -1.1 239,295 - -0.7 239,326 + +1.1 239,460 - modA HEPCGN_01580 0.18 +1.8 239,510 - modA HEPCGN_01580 0.25 +0.8 239,638 + modA HEPCGN_01580 0.41 +3.5 239,772 - modA HEPCGN_01580 0.59 +0.3 240,001 + modA HEPCGN_01580 0.88 +2.1 240,032 + +1.7 240,080 - -0.6 240,089 + -0.1 240,089 + +0.5 240,089 + -0.4 240,090 - +2.7 240,125 + +0.2 240,195 - modB HEPCGN_01585 0.15 +0.6 240,200 + modB HEPCGN_01585 0.16 +1.6 240,200 + modB HEPCGN_01585 0.16 +0.4 240,201 - modB HEPCGN_01585 0.16 +0.6 240,240 - modB HEPCGN_01585 0.22 -0.9 240,248 + modB HEPCGN_01585 0.23 +0.3 240,249 - modB HEPCGN_01585 0.23 +1.3 240,284 + modB HEPCGN_01585 0.28 +1.5 240,284 + modB HEPCGN_01585 0.28 +1.0 240,285 - modB HEPCGN_01585 0.28 +1.7 240,285 - modB HEPCGN_01585 0.28 +1.3 240,360 + modB HEPCGN_01585 0.39 +1.1 240,511 - modB HEPCGN_01585 0.61 +0.4 240,538 - modB HEPCGN_01585 0.65 +1.7 240,642 + modB HEPCGN_01585 0.80 +1.0 240,642 + modB HEPCGN_01585 0.80 +2.6 240,642 + modB HEPCGN_01585 0.80 +0.4 240,642 + modB HEPCGN_01585 0.80 +2.3 240,642 + modB HEPCGN_01585 0.80 +0.8 240,642 + modB HEPCGN_01585 0.80 +2.0 240,642 + modB HEPCGN_01585 0.80 +1.5 240,643 - modB HEPCGN_01585 0.80 +1.6 240,646 + modB HEPCGN_01585 0.80 +1.1 240,646 + modB HEPCGN_01585 0.80 -0.1 240,647 - modB HEPCGN_01585 0.81 +1.8 240,647 - modB HEPCGN_01585 0.81 +2.0 240,647 - modB HEPCGN_01585 0.81 +1.9 240,647 - modB HEPCGN_01585 0.81 +1.2 240,648 + modB HEPCGN_01585 0.81 +1.5 240,696 + modB HEPCGN_01585 0.88 +0.4 240,699 + modB HEPCGN_01585 0.88 +0.7 240,699 + modB HEPCGN_01585 0.88 +1.1 240,700 - modB HEPCGN_01585 0.88 +0.8 240,967 + modC HEPCGN_01590 0.17 +1.6 240,967 + modC HEPCGN_01590 0.17 +1.8 241,015 + modC HEPCGN_01590 0.22 +0.4 241,021 - modC HEPCGN_01590 0.22 +1.5 241,291 - modC HEPCGN_01590 0.48 +1.0 241,332 + modC HEPCGN_01590 0.52 +1.8 241,332 + modC HEPCGN_01590 0.52 +1.0 241,332 + modC HEPCGN_01590 0.52 +2.4 241,333 - modC HEPCGN_01590 0.52 +1.6 241,498 + modC HEPCGN_01590 0.68 +0.3 241,499 - modC HEPCGN_01590 0.68 -0.0 241,565 + modC HEPCGN_01590 0.74 +1.8 241,667 - modC HEPCGN_01590 0.83 -0.0 241,686 - modC HEPCGN_01590 0.85 -1.3 241,688 + modC HEPCGN_01590 0.85 -2.5 241,688 + modC HEPCGN_01590 0.85 +1.0 241,688 + modC HEPCGN_01590 0.85 +0.6 241,693 - modC HEPCGN_01590 0.86 -0.2
Or see this region's nucleotide sequence