Strain Fitness in Escherichia coli ECOR38 around HEPCGN_20170

Experiment: RB23

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RB23
2,783,855	+	gabP	HEPCGN_20160	0.80	-1.7
2,783,856	-	gabP	HEPCGN_20160	0.80	+0.7
2,783,970	+	gabP	HEPCGN_20160	0.89	-0.3
2,783,970	+	gabP	HEPCGN_20160	0.89	+0.5
2,783,985	-	gabP	HEPCGN_20160	0.90	-0.2
2,784,035	+				-0.2
2,784,057	+				-1.1
2,784,092	+				+1.1
2,784,117	+				-0.0
2,784,117	+				-1.4
2,784,117	+				-0.4
2,784,158	+				+0.6
2,784,197	+				+0.9
2,784,197	+				-1.2
2,784,198	-				-0.6
2,784,353	+	csiR	HEPCGN_20165	0.31	+0.5
2,784,585	+	csiR	HEPCGN_20165	0.66	+0.9
2,784,586	-	csiR	HEPCGN_20165	0.66	-0.4
2,784,586	-	csiR	HEPCGN_20165	0.66	+0.4
2,784,766	+				+0.6
2,784,811	-				-0.9
2,784,896	+	kbp	HEPCGN_20170	0.18	-0.3
2,784,902	-	kbp	HEPCGN_20170	0.20	-0.6
2,784,908	+	kbp	HEPCGN_20170	0.21	+0.1
2,784,909	-	kbp	HEPCGN_20170	0.21	+1.1
2,784,920	-	kbp	HEPCGN_20170	0.24	-0.8
2,784,920	-	kbp	HEPCGN_20170	0.24	+0.3
2,784,920	-	kbp	HEPCGN_20170	0.24	-0.4
2,785,143	+	kbp	HEPCGN_20170	0.73	+0.5
2,785,143	+	kbp	HEPCGN_20170	0.73	-0.5
2,785,193	+	kbp	HEPCGN_20170	0.84	+1.3
2,785,262	+				+0.6
2,785,301	-				+0.3
2,785,348	-				-0.1
2,785,348	-				-0.6
2,785,390	+	yqaE	HEPCGN_20175	0.28	+0.7
2,785,392	+	yqaE	HEPCGN_20175	0.29	+0.0
2,785,393	-	yqaE	HEPCGN_20175	0.30	+0.8
2,785,393	-	yqaE	HEPCGN_20175	0.30	-1.0
2,785,417	+	yqaE	HEPCGN_20175	0.45	+1.0
2,785,418	-	yqaE	HEPCGN_20175	0.45	+0.9
2,785,418	-	yqaE	HEPCGN_20175	0.45	+0.1
2,785,420	+	yqaE	HEPCGN_20175	0.47	+0.0
2,785,420	+	yqaE	HEPCGN_20175	0.47	-1.7
2,785,505	-				+0.4
2,785,516	-				+1.2
2,785,558	-				+0.5
2,785,558	-				-0.1
2,785,566	+				+1.2
2,785,614	+				-0.1
2,785,614	+				-0.7
2,785,615	-				-0.4
2,785,919	+	ygaV	HEPCGN_20180	0.77	-1.0
2,785,921	+	ygaV	HEPCGN_20180	0.78	-0.9
2,785,975	+				-1.7
2,786,098	-	ygaP	HEPCGN_20185	0.19	-0.8