Strain Fitness in Escherichia coli ECOR38 around HEPCGN_18200

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnp-IS3 and HEPCGN_18210 are separated by 668 nucleotides HEPCGN_18200: tnp-IS3 - IS3 family transposase, at 2,393,584 to 2,393,895 tnp-IS3 HEPCGN_18210: HEPCGN_18210 - hypothetical protein, at 2,394,564 to 2,394,806 _18210 Position (kb) 2393 2394Strain fitness (log2 ratio) -2 -1 0 1at 2394.047 kb on - strandat 2394.158 kb on + strandat 2394.159 kb on - strandat 2394.284 kb on + strandat 2394.284 kb on + strandat 2394.284 kb on + strandat 2394.285 kb on - strandat 2394.294 kb on - strandat 2394.355 kb on + strandat 2394.356 kb on - strandat 2394.443 kb on + strandat 2394.443 kb on + strandat 2394.509 kb on + strandat 2394.510 kb on - strandat 2394.524 kb on - strandat 2394.542 kb on + strandat 2394.562 kb on + strandat 2394.562 kb on + strandat 2394.562 kb on + strandat 2394.562 kb on + strandat 2394.563 kb on - strandat 2394.577 kb on + strandat 2394.585 kb on - strandat 2394.626 kb on + strand, within HEPCGN_18210at 2394.627 kb on - strand, within HEPCGN_18210at 2394.685 kb on - strand, within HEPCGN_18210at 2394.791 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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2,394,047 - -0.1
2,394,158 + -0.4
2,394,159 - -1.3
2,394,284 + -0.5
2,394,284 + +0.5
2,394,284 + -0.4
2,394,285 - +0.8
2,394,294 - +0.0
2,394,355 + +0.4
2,394,356 - +0.6
2,394,443 + +0.2
2,394,443 + +0.9
2,394,509 + -0.3
2,394,510 - -0.6
2,394,524 - -0.4
2,394,542 + +0.8
2,394,562 + +0.2
2,394,562 + -0.9
2,394,562 + +0.5
2,394,562 + -1.3
2,394,563 - -0.2
2,394,577 + -1.8
2,394,585 - -0.4
2,394,626 + HEPCGN_18210 0.26 +0.2
2,394,627 - HEPCGN_18210 0.26 -1.6
2,394,685 - HEPCGN_18210 0.50 -0.2
2,394,791 + -1.6

Or see this region's nucleotide sequence