Strain Fitness in Escherichia coli ECOR38 around HEPCGN_16150

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttusD and tusD overlap by 1 nucleotidestusD and tusB are separated by 7 nucleotidestusB and rpsL are separated by 125 nucleotidesrpsL and rpsG are separated by 96 nucleotidesrpsG and fusA are separated by 96 nucleotides HEPCGN_16135: tusD - sulfurtransferase complex subunit TusD, at 1,998,063 to 1,998,449 tusD HEPCGN_16140: tusD - sulfurtransferase complex subunit TusD, at 1,998,449 to 1,998,808 tusD HEPCGN_16145: tusB - sulfurtransferase complex subunit TusB, at 1,998,816 to 1,999,103 tusB HEPCGN_16150: rpsL - 30S ribosomal protein S12, at 1,999,229 to 1,999,603 rpsL HEPCGN_16155: rpsG - 30S ribosomal protein S7, at 1,999,700 to 2,000,170 rpsG HEPCGN_16160: fusA - elongation factor G, at 2,000,267 to 2,002,381 fusA Position (kb) 1999 2000Strain fitness (log2 ratio) -1 0 1 2 3at 1998.815 kb on + strandat 1999.120 kb on + strandat 1999.167 kb on + strandat 1999.185 kb on + strandat 1999.188 kb on + strandat 1999.196 kb on + strandat 2000.168 kb on + strandat 2000.232 kb on + strandat 2000.232 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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1,998,815 + -0.0
1,999,120 + +0.3
1,999,167 + +1.0
1,999,185 + +3.0
1,999,188 + +0.7
1,999,196 + -0.0
2,000,168 + +0.4
2,000,232 + +0.1
2,000,232 + +0.7

Or see this region's nucleotide sequence