Experiment: RB23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dnaC and yjjA are separated by 48 nucleotides yjjA and opgB are separated by 253 nucleotides opgB and HEPCGN_09380 are separated by 139 nucleotides
HEPCGN_09365: dnaC - DNA replication protein DnaC, at 611,857 to 612,594
dnaC
HEPCGN_09370: yjjA - Uncharacterized protein YjjA, at 612,643 to 613,137
yjjA
HEPCGN_09375: opgB - phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase, at 613,391 to 615,682
opgB
HEPCGN_09380: HEPCGN_09380 - Putative zinc-binding dehydrogenase, at 615,822 to 616,505
_09380
Position (kb) 613
614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 612.575 kb on + strand at 612.589 kb on + strand at 612.589 kb on + strand at 612.590 kb on - strand at 612.592 kb on + strand at 612.613 kb on + strand at 612.614 kb on - strand at 612.654 kb on + strand at 612.657 kb on + strand at 612.809 kb on + strand, within yjjA at 612.814 kb on - strand, within yjjA at 612.843 kb on - strand, within yjjA at 612.852 kb on + strand, within yjjA at 612.852 kb on + strand, within yjjA at 612.883 kb on + strand, within yjjA at 612.942 kb on - strand, within yjjA at 613.054 kb on - strand, within yjjA at 613.109 kb on + strand at 613.262 kb on + strand at 613.313 kb on + strand at 613.328 kb on - strand at 613.328 kb on - strand at 613.439 kb on + strand at 613.440 kb on - strand at 613.460 kb on - strand at 613.460 kb on - strand at 613.485 kb on + strand at 613.556 kb on - strand at 613.574 kb on + strand at 613.575 kb on - strand at 613.575 kb on - strand at 613.576 kb on + strand at 613.577 kb on - strand at 613.617 kb on - strand at 613.617 kb on - strand at 613.617 kb on - strand at 613.835 kb on + strand, within opgB at 613.839 kb on - strand, within opgB at 613.839 kb on - strand, within opgB at 613.858 kb on + strand, within opgB at 613.859 kb on - strand, within opgB at 613.859 kb on - strand, within opgB at 613.887 kb on - strand, within opgB at 613.887 kb on - strand, within opgB at 613.887 kb on - strand, within opgB at 613.889 kb on - strand, within opgB at 613.892 kb on + strand, within opgB at 614.037 kb on + strand, within opgB at 614.037 kb on + strand, within opgB at 614.235 kb on + strand, within opgB at 614.235 kb on + strand, within opgB at 614.236 kb on - strand, within opgB at 614.237 kb on + strand, within opgB at 614.237 kb on + strand, within opgB at 614.300 kb on + strand, within opgB at 614.309 kb on - strand, within opgB at 614.500 kb on + strand, within opgB at 614.500 kb on + strand, within opgB at 614.548 kb on + strand, within opgB at 614.611 kb on + strand, within opgB at 614.611 kb on + strand, within opgB at 614.690 kb on - strand, within opgB at 614.690 kb on - strand, within opgB at 614.738 kb on + strand, within opgB at 614.798 kb on - strand, within opgB at 615.185 kb on - strand, within opgB at 615.191 kb on - strand, within opgB at 615.212 kb on + strand, within opgB at 615.248 kb on - strand, within opgB at 615.284 kb on - strand, within opgB at 615.443 kb on + strand, within opgB at 615.571 kb on - strand at 615.571 kb on - strand at 615.666 kb on + strand at 615.698 kb on + strand at 615.698 kb on + strand at 615.719 kb on + strand at 615.719 kb on + strand at 615.720 kb on - strand at 615.915 kb on + strand, within HEPCGN_09380 at 616.014 kb on + strand, within HEPCGN_09380 at 616.056 kb on - strand, within HEPCGN_09380 at 616.109 kb on + strand, within HEPCGN_09380 at 616.110 kb on - strand, within HEPCGN_09380 at 616.128 kb on - strand, within HEPCGN_09380 at 616.221 kb on + strand, within HEPCGN_09380 at 616.222 kb on - strand, within HEPCGN_09380 at 616.485 kb on - strand at 616.577 kb on + strand at 616.578 kb on - strand at 616.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RB23 remove 612,575 + +2.0 612,589 + -2.0 612,589 + -0.6 612,590 - +0.7 612,592 + -0.5 612,613 + -2.7 612,614 - +0.1 612,654 + +0.3 612,657 + +0.8 612,809 + yjjA HEPCGN_09370 0.34 +0.1 612,814 - yjjA HEPCGN_09370 0.35 +0.3 612,843 - yjjA HEPCGN_09370 0.40 -0.1 612,852 + yjjA HEPCGN_09370 0.42 +1.0 612,852 + yjjA HEPCGN_09370 0.42 -0.2 612,883 + yjjA HEPCGN_09370 0.48 +0.5 612,942 - yjjA HEPCGN_09370 0.60 -0.5 613,054 - yjjA HEPCGN_09370 0.83 +0.0 613,109 + +0.3 613,262 + +0.2 613,313 + +0.6 613,328 - +1.0 613,328 - +0.0 613,439 + -1.0 613,440 - +0.2 613,460 - -1.9 613,460 - -0.7 613,485 + -0.6 613,556 - +0.4 613,574 + -0.8 613,575 - -3.1 613,575 - -0.6 613,576 + +1.1 613,577 - +0.5 613,617 - -0.9 613,617 - -0.3 613,617 - -1.0 613,835 + opgB HEPCGN_09375 0.19 -2.7 613,839 - opgB HEPCGN_09375 0.20 -2.0 613,839 - opgB HEPCGN_09375 0.20 +0.8 613,858 + opgB HEPCGN_09375 0.20 -2.3 613,859 - opgB HEPCGN_09375 0.20 -1.4 613,859 - opgB HEPCGN_09375 0.20 -1.5 613,887 - opgB HEPCGN_09375 0.22 -0.9 613,887 - opgB HEPCGN_09375 0.22 -1.0 613,887 - opgB HEPCGN_09375 0.22 -0.7 613,889 - opgB HEPCGN_09375 0.22 -0.4 613,892 + opgB HEPCGN_09375 0.22 -1.0 614,037 + opgB HEPCGN_09375 0.28 -0.5 614,037 + opgB HEPCGN_09375 0.28 -0.9 614,235 + opgB HEPCGN_09375 0.37 +0.5 614,235 + opgB HEPCGN_09375 0.37 -0.2 614,236 - opgB HEPCGN_09375 0.37 -0.7 614,237 + opgB HEPCGN_09375 0.37 +0.1 614,237 + opgB HEPCGN_09375 0.37 -0.3 614,300 + opgB HEPCGN_09375 0.40 -0.4 614,309 - opgB HEPCGN_09375 0.40 -0.5 614,500 + opgB HEPCGN_09375 0.48 +0.5 614,500 + opgB HEPCGN_09375 0.48 -0.8 614,548 + opgB HEPCGN_09375 0.50 -0.9 614,611 + opgB HEPCGN_09375 0.53 -0.3 614,611 + opgB HEPCGN_09375 0.53 -0.6 614,690 - opgB HEPCGN_09375 0.57 -0.9 614,690 - opgB HEPCGN_09375 0.57 -0.6 614,738 + opgB HEPCGN_09375 0.59 -0.9 614,798 - opgB HEPCGN_09375 0.61 -1.5 615,185 - opgB HEPCGN_09375 0.78 +0.8 615,191 - opgB HEPCGN_09375 0.79 +0.4 615,212 + opgB HEPCGN_09375 0.79 +0.2 615,248 - opgB HEPCGN_09375 0.81 -1.2 615,284 - opgB HEPCGN_09375 0.83 -1.1 615,443 + opgB HEPCGN_09375 0.90 -1.9 615,571 - -1.0 615,571 - -1.3 615,666 + +0.7 615,698 + +0.0 615,698 + -0.1 615,719 + +1.0 615,719 + +0.7 615,720 - +0.2 615,915 + HEPCGN_09380 0.14 +0.4 616,014 + HEPCGN_09380 0.28 +0.1 616,056 - HEPCGN_09380 0.34 -0.5 616,109 + HEPCGN_09380 0.42 -1.0 616,110 - HEPCGN_09380 0.42 +0.6 616,128 - HEPCGN_09380 0.45 +0.5 616,221 + HEPCGN_09380 0.58 -1.0 616,222 - HEPCGN_09380 0.58 -1.0 616,485 - +0.7 616,577 + -1.4 616,578 - -0.7 616,654 - -0.3
Or see this region's nucleotide sequence