Strain Fitness in Escherichia coli ECOR38 around HEPCGN_08810

Experiment: RB23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdjlA and lptD are separated by 254 nucleotideslptD and surA are separated by 52 nucleotides HEPCGN_08805: djlA - co-chaperone DjlA, at 504,237 to 505,052 djlA HEPCGN_08810: lptD - LPS assembly protein LptD, at 505,307 to 507,661 lptD HEPCGN_08815: surA - peptidylprolyl isomerase SurA, at 507,714 to 509,000 surA Position (kb) 505 506 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 504.375 kb on - strand, within djlAat 504.380 kb on - strand, within djlAat 504.380 kb on - strand, within djlAat 504.380 kb on - strand, within djlAat 504.431 kb on + strand, within djlAat 504.589 kb on + strand, within djlAat 504.590 kb on - strand, within djlAat 504.590 kb on - strand, within djlAat 504.669 kb on + strand, within djlAat 504.824 kb on + strand, within djlAat 504.825 kb on - strand, within djlAat 504.859 kb on - strand, within djlAat 504.959 kb on + strand, within djlAat 504.960 kb on - strand, within djlAat 504.960 kb on - strand, within djlAat 504.960 kb on - strand, within djlAat 504.978 kb on + strandat 504.978 kb on + strandat 505.046 kb on - strandat 505.052 kb on + strandat 505.052 kb on + strandat 505.052 kb on + strandat 505.052 kb on + strandat 505.053 kb on - strandat 505.054 kb on + strandat 505.099 kb on - strandat 505.101 kb on - strandat 505.101 kb on - strandat 505.101 kb on - strandat 505.113 kb on - strandat 505.153 kb on - strandat 505.167 kb on + strandat 505.168 kb on - strandat 505.191 kb on - strandat 505.191 kb on - strandat 505.206 kb on - strandat 505.220 kb on - strandat 507.600 kb on - strandat 507.679 kb on + strandat 507.679 kb on + strandat 508.016 kb on + strand, within surAat 508.017 kb on - strand, within surAat 508.071 kb on + strand, within surAat 508.071 kb on + strand, within surAat 508.072 kb on - strand, within surAat 508.095 kb on + strand, within surAat 508.096 kb on - strand, within surAat 508.124 kb on + strand, within surAat 508.124 kb on + strand, within surAat 508.125 kb on - strand, within surAat 508.125 kb on - strand, within surAat 508.551 kb on - strand, within surA

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Per-strain Table

Position Strand Gene LocusTag Fraction RB23
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504,375 - djlA HEPCGN_08805 0.17 -0.2
504,380 - djlA HEPCGN_08805 0.18 -0.1
504,380 - djlA HEPCGN_08805 0.18 -0.0
504,380 - djlA HEPCGN_08805 0.18 +0.7
504,431 + djlA HEPCGN_08805 0.24 -0.6
504,589 + djlA HEPCGN_08805 0.43 +0.3
504,590 - djlA HEPCGN_08805 0.43 -0.1
504,590 - djlA HEPCGN_08805 0.43 +0.4
504,669 + djlA HEPCGN_08805 0.53 +0.0
504,824 + djlA HEPCGN_08805 0.72 +1.1
504,825 - djlA HEPCGN_08805 0.72 +0.0
504,859 - djlA HEPCGN_08805 0.76 +0.4
504,959 + djlA HEPCGN_08805 0.88 +0.5
504,960 - djlA HEPCGN_08805 0.89 -0.3
504,960 - djlA HEPCGN_08805 0.89 -0.5
504,960 - djlA HEPCGN_08805 0.89 +0.5
504,978 + +1.3
504,978 + +0.1
505,046 - +0.7
505,052 + -0.2
505,052 + +0.6
505,052 + +1.5
505,052 + -1.1
505,053 - -1.1
505,054 + +0.5
505,099 - -0.1
505,101 - -0.7
505,101 - +0.1
505,101 - +0.1
505,113 - +0.3
505,153 - +0.1
505,167 + +0.1
505,168 - +1.7
505,191 - +0.5
505,191 - +2.9
505,206 - +1.1
505,220 - +0.1
507,600 - -3.5
507,679 + +0.6
507,679 + -0.0
508,016 + surA HEPCGN_08815 0.23 +0.3
508,017 - surA HEPCGN_08815 0.24 +0.3
508,071 + surA HEPCGN_08815 0.28 -0.4
508,071 + surA HEPCGN_08815 0.28 +1.9
508,072 - surA HEPCGN_08815 0.28 +0.3
508,095 + surA HEPCGN_08815 0.30 -0.4
508,096 - surA HEPCGN_08815 0.30 -0.1
508,124 + surA HEPCGN_08815 0.32 +1.9
508,124 + surA HEPCGN_08815 0.32 +0.9
508,125 - surA HEPCGN_08815 0.32 +0.3
508,125 - surA HEPCGN_08815 0.32 +1.9
508,551 - surA HEPCGN_08815 0.65 -1.4

Or see this region's nucleotide sequence