Experiment: RB23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panC and HEPCGN_08385 are separated by 81 nucleotides HEPCGN_08385 and rpnC are separated by 68 nucleotides rpnC and panD are separated by 273 nucleotides panD and yadE are separated by 3 nucleotides
HEPCGN_08380: panC - pantoate--beta-alanine ligase, at 413,772 to 414,623
panC
HEPCGN_08385: HEPCGN_08385 - transposase, at 414,705 to 414,914
_08385
HEPCGN_08390: rpnC - Recombination-promoting nuclease RpnC, at 414,983 to 415,915
rpnC
HEPCGN_08395: panD - aspartate 1-decarboxylase, at 416,189 to 416,569
panD
HEPCGN_08400: yadE - Uncharacterized protein YadE, at 416,573 to 417,802
yadE
Position (kb) 414
415
416 Strain fitness (log2 ratio) -2
-1
0
1
2 at 414.026 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.093 kb on + strand, within panC at 414.094 kb on - strand, within panC at 414.266 kb on + strand, within panC at 414.302 kb on + strand, within panC at 414.384 kb on + strand, within panC at 414.385 kb on - strand, within panC at 414.394 kb on + strand, within panC at 414.447 kb on - strand, within panC at 414.498 kb on - strand, within panC at 414.557 kb on - strand at 414.624 kb on + strand at 414.624 kb on + strand at 414.625 kb on - strand at 414.629 kb on - strand at 414.629 kb on - strand at 414.658 kb on - strand at 414.687 kb on - strand at 414.698 kb on - strand at 414.698 kb on - strand at 414.698 kb on - strand at 414.706 kb on + strand at 414.707 kb on - strand at 414.716 kb on + strand at 414.716 kb on + strand at 414.721 kb on - strand at 414.725 kb on + strand at 414.745 kb on - strand, within HEPCGN_08385 at 414.745 kb on - strand, within HEPCGN_08385 at 414.827 kb on - strand, within HEPCGN_08385 at 414.827 kb on - strand, within HEPCGN_08385 at 414.915 kb on - strand at 414.915 kb on - strand at 414.925 kb on - strand at 414.954 kb on - strand at 414.962 kb on - strand at 414.985 kb on - strand at 414.989 kb on - strand at 415.088 kb on + strand, within rpnC at 415.089 kb on - strand, within rpnC at 415.109 kb on + strand, within rpnC at 415.110 kb on - strand, within rpnC at 415.110 kb on - strand, within rpnC at 415.195 kb on + strand, within rpnC at 415.256 kb on - strand, within rpnC at 415.273 kb on + strand, within rpnC at 415.273 kb on + strand, within rpnC at 415.275 kb on + strand, within rpnC at 415.276 kb on - strand, within rpnC at 415.292 kb on + strand, within rpnC at 415.293 kb on - strand, within rpnC at 415.311 kb on + strand, within rpnC at 415.350 kb on - strand, within rpnC at 415.355 kb on + strand, within rpnC at 415.355 kb on + strand, within rpnC at 415.355 kb on + strand, within rpnC at 415.356 kb on - strand, within rpnC at 415.373 kb on - strand, within rpnC at 415.468 kb on + strand, within rpnC at 415.470 kb on + strand, within rpnC at 415.471 kb on - strand, within rpnC at 415.471 kb on - strand, within rpnC at 415.471 kb on - strand, within rpnC at 415.551 kb on + strand, within rpnC at 415.582 kb on + strand, within rpnC at 415.621 kb on + strand, within rpnC at 415.692 kb on + strand, within rpnC at 415.811 kb on + strand, within rpnC at 415.866 kb on - strand at 416.095 kb on - strand at 416.174 kb on - strand at 416.181 kb on + strand at 416.182 kb on - strand at 416.252 kb on + strand, within panD at 416.253 kb on - strand, within panD at 416.253 kb on - strand, within panD at 416.324 kb on - strand, within panD at 416.360 kb on + strand, within panD at 416.361 kb on - strand, within panD at 416.361 kb on - strand, within panD at 416.392 kb on + strand, within panD at 416.392 kb on + strand, within panD at 416.465 kb on - strand, within panD at 416.485 kb on + strand, within panD at 416.486 kb on - strand, within panD at 416.508 kb on - strand, within panD at 416.574 kb on + strand at 416.590 kb on + strand at 416.630 kb on + strand at 416.631 kb on - strand at 416.631 kb on - strand at 416.636 kb on - strand at 416.638 kb on - strand at 416.648 kb on + strand at 416.648 kb on + strand at 416.649 kb on - strand at 416.675 kb on + strand at 416.676 kb on - strand at 416.746 kb on + strand, within yadE at 416.846 kb on - strand, within yadE at 416.859 kb on - strand, within yadE
Per-strain Table
Position Strand Gene LocusTag Fraction RB23 remove 414,026 + panC HEPCGN_08380 0.30 +2.1 414,093 + panC HEPCGN_08380 0.38 +0.8 414,093 + panC HEPCGN_08380 0.38 +0.5 414,093 + panC HEPCGN_08380 0.38 -0.4 414,093 + panC HEPCGN_08380 0.38 +0.6 414,093 + panC HEPCGN_08380 0.38 +0.2 414,093 + panC HEPCGN_08380 0.38 +0.5 414,094 - panC HEPCGN_08380 0.38 +0.0 414,266 + panC HEPCGN_08380 0.58 +0.3 414,302 + panC HEPCGN_08380 0.62 +0.4 414,384 + panC HEPCGN_08380 0.72 +0.4 414,385 - panC HEPCGN_08380 0.72 +0.8 414,394 + panC HEPCGN_08380 0.73 +0.8 414,447 - panC HEPCGN_08380 0.79 -0.4 414,498 - panC HEPCGN_08380 0.85 +0.2 414,557 - -0.4 414,624 + -0.0 414,624 + +0.2 414,625 - -1.2 414,629 - +0.2 414,629 - -0.1 414,658 - +0.6 414,687 - +0.3 414,698 - +1.6 414,698 - +0.5 414,698 - -0.1 414,706 + -1.0 414,707 - -0.6 414,716 + +0.6 414,716 + +0.6 414,721 - -0.4 414,725 + -0.0 414,745 - HEPCGN_08385 0.19 -1.9 414,745 - HEPCGN_08385 0.19 +0.7 414,827 - HEPCGN_08385 0.58 -0.0 414,827 - HEPCGN_08385 0.58 +0.9 414,915 - +0.2 414,915 - +0.4 414,925 - +1.5 414,954 - +0.1 414,962 - -0.0 414,985 - -0.8 414,989 - -0.1 415,088 + rpnC HEPCGN_08390 0.11 -0.6 415,089 - rpnC HEPCGN_08390 0.11 -0.1 415,109 + rpnC HEPCGN_08390 0.14 -0.3 415,110 - rpnC HEPCGN_08390 0.14 -0.3 415,110 - rpnC HEPCGN_08390 0.14 -1.7 415,195 + rpnC HEPCGN_08390 0.23 +0.8 415,256 - rpnC HEPCGN_08390 0.29 -0.3 415,273 + rpnC HEPCGN_08390 0.31 -0.4 415,273 + rpnC HEPCGN_08390 0.31 +0.9 415,275 + rpnC HEPCGN_08390 0.31 -0.5 415,276 - rpnC HEPCGN_08390 0.31 -0.4 415,292 + rpnC HEPCGN_08390 0.33 -0.9 415,293 - rpnC HEPCGN_08390 0.33 +0.0 415,311 + rpnC HEPCGN_08390 0.35 -1.0 415,350 - rpnC HEPCGN_08390 0.39 +0.1 415,355 + rpnC HEPCGN_08390 0.40 +0.0 415,355 + rpnC HEPCGN_08390 0.40 -0.1 415,355 + rpnC HEPCGN_08390 0.40 -0.1 415,356 - rpnC HEPCGN_08390 0.40 -1.0 415,373 - rpnC HEPCGN_08390 0.42 +0.1 415,468 + rpnC HEPCGN_08390 0.52 +1.9 415,470 + rpnC HEPCGN_08390 0.52 +1.3 415,471 - rpnC HEPCGN_08390 0.52 +1.1 415,471 - rpnC HEPCGN_08390 0.52 +0.3 415,471 - rpnC HEPCGN_08390 0.52 +0.3 415,551 + rpnC HEPCGN_08390 0.61 -0.1 415,582 + rpnC HEPCGN_08390 0.64 -0.3 415,621 + rpnC HEPCGN_08390 0.68 -0.6 415,692 + rpnC HEPCGN_08390 0.76 -0.7 415,811 + rpnC HEPCGN_08390 0.89 +0.0 415,866 - +0.2 416,095 - -0.1 416,174 - -0.4 416,181 + -0.1 416,182 - -0.2 416,252 + panD HEPCGN_08395 0.17 -0.1 416,253 - panD HEPCGN_08395 0.17 -0.6 416,253 - panD HEPCGN_08395 0.17 +0.5 416,324 - panD HEPCGN_08395 0.35 +0.1 416,360 + panD HEPCGN_08395 0.45 -0.8 416,361 - panD HEPCGN_08395 0.45 -0.4 416,361 - panD HEPCGN_08395 0.45 +0.0 416,392 + panD HEPCGN_08395 0.53 +0.2 416,392 + panD HEPCGN_08395 0.53 -0.4 416,465 - panD HEPCGN_08395 0.72 +0.1 416,485 + panD HEPCGN_08395 0.78 +0.2 416,486 - panD HEPCGN_08395 0.78 -0.8 416,508 - panD HEPCGN_08395 0.84 +0.4 416,574 + +0.1 416,590 + +0.4 416,630 + -1.1 416,631 - -0.2 416,631 - +0.5 416,636 - +0.6 416,638 - +0.2 416,648 + -0.3 416,648 + -1.1 416,649 - +0.0 416,675 + -0.1 416,676 - -0.4 416,746 + yadE HEPCGN_08400 0.14 -1.0 416,846 - yadE HEPCGN_08400 0.22 -0.4 416,859 - yadE HEPCGN_08400 0.23 +0.1
Or see this region's nucleotide sequence