Experiment: RB23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pphA and yebW are separated by 0 nucleotides yebW and yebV are separated by 20 nucleotides yebV and rsmF are separated by 117 nucleotides rsmF and yebT are separated by 73 nucleotides
HEPCGN_04825: pphA - protein-serine/threonine phosphatase, at 839,834 to 840,490
pphA
HEPCGN_04830: yebW - Uncharacterized protein YebW, at 840,491 to 840,766
yebW
HEPCGN_04835: yebV - Uncharacterized protein YebV, at 840,787 to 841,023
yebV
HEPCGN_04840: rsmF - 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF, at 841,141 to 842,586
rsmF
HEPCGN_04845: yebT - lipid-binding membrane homeostasis protein YebT, at 842,660 to 845,293
yebT
Position (kb) 841
842
843 Strain fitness (log2 ratio) -2
-1
0
1
2 at 840.145 kb on + strand, within pphA at 840.161 kb on + strand, within pphA at 840.162 kb on - strand, within pphA at 840.162 kb on - strand, within pphA at 840.203 kb on + strand, within pphA at 840.203 kb on + strand, within pphA at 840.226 kb on - strand, within pphA at 840.281 kb on + strand, within pphA at 840.281 kb on + strand, within pphA at 840.282 kb on - strand, within pphA at 840.336 kb on + strand, within pphA at 840.365 kb on - strand, within pphA at 840.394 kb on + strand, within pphA at 840.395 kb on - strand, within pphA at 840.395 kb on - strand, within pphA at 840.434 kb on + strand at 840.437 kb on - strand at 840.437 kb on - strand at 840.488 kb on + strand at 840.533 kb on + strand, within yebW at 840.534 kb on - strand, within yebW at 840.586 kb on + strand, within yebW at 840.587 kb on - strand, within yebW at 840.591 kb on + strand, within yebW at 840.655 kb on - strand, within yebW at 840.877 kb on - strand, within yebV at 840.877 kb on - strand, within yebV at 840.909 kb on + strand, within yebV at 840.913 kb on + strand, within yebV at 841.088 kb on + strand at 841.259 kb on - strand at 841.271 kb on - strand at 841.407 kb on + strand, within rsmF at 841.616 kb on + strand, within rsmF at 841.630 kb on + strand, within rsmF at 841.735 kb on - strand, within rsmF at 841.735 kb on - strand, within rsmF at 841.788 kb on - strand, within rsmF at 841.873 kb on + strand, within rsmF at 842.076 kb on + strand, within rsmF at 842.108 kb on - strand, within rsmF at 842.289 kb on - strand, within rsmF at 842.449 kb on - strand at 842.588 kb on + strand at 842.589 kb on - strand at 842.618 kb on + strand at 842.823 kb on - strand at 843.044 kb on - strand, within yebT at 843.076 kb on + strand, within yebT at 843.142 kb on - strand, within yebT at 843.240 kb on + strand, within yebT at 843.241 kb on - strand, within yebT at 843.424 kb on - strand, within yebT at 843.424 kb on - strand, within yebT at 843.430 kb on + strand, within yebT at 843.484 kb on + strand, within yebT at 843.485 kb on - strand, within yebT
Per-strain Table
Position Strand Gene LocusTag Fraction RB23 remove 840,145 + pphA HEPCGN_04825 0.47 -0.2 840,161 + pphA HEPCGN_04825 0.50 +0.2 840,162 - pphA HEPCGN_04825 0.50 -1.0 840,162 - pphA HEPCGN_04825 0.50 +0.7 840,203 + pphA HEPCGN_04825 0.56 +0.6 840,203 + pphA HEPCGN_04825 0.56 -0.3 840,226 - pphA HEPCGN_04825 0.60 -0.3 840,281 + pphA HEPCGN_04825 0.68 +0.1 840,281 + pphA HEPCGN_04825 0.68 -0.2 840,282 - pphA HEPCGN_04825 0.68 +0.9 840,336 + pphA HEPCGN_04825 0.76 -0.3 840,365 - pphA HEPCGN_04825 0.81 -1.2 840,394 + pphA HEPCGN_04825 0.85 -0.2 840,395 - pphA HEPCGN_04825 0.85 -0.0 840,395 - pphA HEPCGN_04825 0.85 +0.8 840,434 + -1.2 840,437 - -0.1 840,437 - -0.2 840,488 + -0.8 840,533 + yebW HEPCGN_04830 0.15 +0.6 840,534 - yebW HEPCGN_04830 0.16 -0.0 840,586 + yebW HEPCGN_04830 0.34 +1.0 840,587 - yebW HEPCGN_04830 0.35 +0.4 840,591 + yebW HEPCGN_04830 0.36 -0.8 840,655 - yebW HEPCGN_04830 0.59 +0.1 840,877 - yebV HEPCGN_04835 0.38 -1.7 840,877 - yebV HEPCGN_04835 0.38 -0.4 840,909 + yebV HEPCGN_04835 0.51 -0.0 840,913 + yebV HEPCGN_04835 0.53 -0.4 841,088 + +0.9 841,259 - +0.6 841,271 - -0.2 841,407 + rsmF HEPCGN_04840 0.18 -0.0 841,616 + rsmF HEPCGN_04840 0.33 +2.0 841,630 + rsmF HEPCGN_04840 0.34 +0.1 841,735 - rsmF HEPCGN_04840 0.41 -2.3 841,735 - rsmF HEPCGN_04840 0.41 +0.5 841,788 - rsmF HEPCGN_04840 0.45 -0.1 841,873 + rsmF HEPCGN_04840 0.51 -0.2 842,076 + rsmF HEPCGN_04840 0.65 +0.7 842,108 - rsmF HEPCGN_04840 0.67 +1.9 842,289 - rsmF HEPCGN_04840 0.79 +0.8 842,449 - -0.8 842,588 + -0.3 842,589 - +0.0 842,618 + +0.6 842,823 - -1.6 843,044 - yebT HEPCGN_04845 0.15 +0.6 843,076 + yebT HEPCGN_04845 0.16 -0.2 843,142 - yebT HEPCGN_04845 0.18 +0.1 843,240 + yebT HEPCGN_04845 0.22 -0.1 843,241 - yebT HEPCGN_04845 0.22 +1.6 843,424 - yebT HEPCGN_04845 0.29 +0.1 843,424 - yebT HEPCGN_04845 0.29 -0.3 843,430 + yebT HEPCGN_04845 0.29 +0.3 843,484 + yebT HEPCGN_04845 0.31 +0.9 843,485 - yebT HEPCGN_04845 0.31 +1.0
Or see this region's nucleotide sequence