Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20180

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS20160 and LU632_RS20165 overlap by 23 nucleotidesLU632_RS20165 and LU632_RS20170 overlap by 38 nucleotidesLU632_RS20170 and LU632_RS20175 overlap by 71 nucleotidesLU632_RS20175 and LU632_RS20180 are separated by 203 nucleotidesLU632_RS20180 and LU632_RS20185 are separated by 44 nucleotidesLU632_RS20185 and LU632_RS20190 overlap by 4 nucleotides LU632_RS20160: LU632_RS20160 - DeoR/GlpR family DNA-binding transcription regulator, at 3,839,383 to 3,840,219 _RS20160 LU632_RS20165: LU632_RS20165 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 3,840,197 to 3,840,466 _RS20165 LU632_RS20170: LU632_RS20170 - four-carbon acid sugar kinase family protein, at 3,840,429 to 3,840,602 _RS20170 LU632_RS20175: LU632_RS20175 - hypothetical protein, at 3,840,532 to 3,840,822 _RS20175 LU632_RS20180: LU632_RS20180 - iron-containing alcohol dehydrogenase, at 3,841,026 to 3,841,418 _RS20180 LU632_RS20185: LU632_RS20185 - YhcH/YjgK/YiaL family protein, at 3,841,463 to 3,841,937 _RS20185 LU632_RS20190: LU632_RS20190 - SDR family oxidoreductase, at 3,841,934 to 3,842,591 _RS20190 Position (kb) 3841 3842Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3840.096 kb on + strand, within LU632_RS20160at 3840.100 kb on + strand, within LU632_RS20160at 3840.133 kb on - strand, within LU632_RS20160at 3840.169 kb on - strandat 3840.323 kb on - strand, within LU632_RS20165at 3840.358 kb on - strand, within LU632_RS20165at 3840.400 kb on - strand, within LU632_RS20165at 3840.400 kb on - strand, within LU632_RS20165at 3840.600 kb on + strandat 3840.603 kb on - strand, within LU632_RS20175at 3840.864 kb on - strandat 3841.160 kb on + strand, within LU632_RS20180at 3841.280 kb on - strand, within LU632_RS20180at 3841.282 kb on + strand, within LU632_RS20180at 3841.283 kb on - strand, within LU632_RS20180at 3841.577 kb on - strand, within LU632_RS20185at 3841.652 kb on - strand, within LU632_RS20185at 3841.670 kb on + strand, within LU632_RS20185at 3841.773 kb on + strand, within LU632_RS20185at 3841.773 kb on + strand, within LU632_RS20185at 3841.774 kb on - strand, within LU632_RS20185at 3842.066 kb on - strand, within LU632_RS20190at 3842.103 kb on + strand, within LU632_RS20190at 3842.115 kb on + strand, within LU632_RS20190at 3842.133 kb on + strand, within LU632_RS20190at 3842.133 kb on + strand, within LU632_RS20190at 3842.134 kb on - strand, within LU632_RS20190at 3842.134 kb on - strand, within LU632_RS20190at 3842.220 kb on + strand, within LU632_RS20190at 3842.220 kb on + strand, within LU632_RS20190at 3842.220 kb on + strand, within LU632_RS20190at 3842.220 kb on + strand, within LU632_RS20190at 3842.224 kb on + strand, within LU632_RS20190at 3842.225 kb on - strand, within LU632_RS20190at 3842.336 kb on + strand, within LU632_RS20190at 3842.397 kb on + strand, within LU632_RS20190at 3842.397 kb on + strand, within LU632_RS20190at 3842.397 kb on + strand, within LU632_RS20190at 3842.398 kb on - strand, within LU632_RS20190

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
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3,840,096 + LU632_RS20160 0.85 -1.0
3,840,100 + LU632_RS20160 0.86 -2.3
3,840,133 - LU632_RS20160 0.90 -1.4
3,840,169 - -0.7
3,840,323 - LU632_RS20165 0.47 -1.4
3,840,358 - LU632_RS20165 0.60 +0.3
3,840,400 - LU632_RS20165 0.75 +2.0
3,840,400 - LU632_RS20165 0.75 +0.9
3,840,600 + +1.1
3,840,603 - LU632_RS20175 0.24 +0.4
3,840,864 - -3.5
3,841,160 + LU632_RS20180 0.34 +3.4
3,841,280 - LU632_RS20180 0.65 +2.8
3,841,282 + LU632_RS20180 0.65 +0.5
3,841,283 - LU632_RS20180 0.65 -0.1
3,841,577 - LU632_RS20185 0.24 -0.4
3,841,652 - LU632_RS20185 0.40 -1.4
3,841,670 + LU632_RS20185 0.44 +0.1
3,841,773 + LU632_RS20185 0.65 +0.1
3,841,773 + LU632_RS20185 0.65 -2.3
3,841,774 - LU632_RS20185 0.65 -0.9
3,842,066 - LU632_RS20190 0.20 +0.5
3,842,103 + LU632_RS20190 0.26 +1.6
3,842,115 + LU632_RS20190 0.28 -1.8
3,842,133 + LU632_RS20190 0.30 -0.3
3,842,133 + LU632_RS20190 0.30 -0.0
3,842,134 - LU632_RS20190 0.30 -0.9
3,842,134 - LU632_RS20190 0.30 -2.0
3,842,220 + LU632_RS20190 0.43 +1.7
3,842,220 + LU632_RS20190 0.43 -0.3
3,842,220 + LU632_RS20190 0.43 -2.5
3,842,220 + LU632_RS20190 0.43 +1.0
3,842,224 + LU632_RS20190 0.44 +1.1
3,842,225 - LU632_RS20190 0.44 +0.2
3,842,336 + LU632_RS20190 0.61 -2.4
3,842,397 + LU632_RS20190 0.70 +0.7
3,842,397 + LU632_RS20190 0.70 +0.3
3,842,397 + LU632_RS20190 0.70 -0.1
3,842,398 - LU632_RS20190 0.71 +1.7

Or see this region's nucleotide sequence