Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fpr and LU632_RS19720 are separated by 0 nucleotides LU632_RS19720 and LU632_RS19725 are separated by 124 nucleotides LU632_RS19725 and tpiA are separated by 120 nucleotides
LU632_RS19715: fpr - ferredoxin--NADP(+) reductase, at 3,745,705 to 3,746,451
fpr
LU632_RS19720: LU632_RS19720 - DUF805 domain-containing protein, at 3,746,452 to 3,746,867
_RS19720
LU632_RS19725: LU632_RS19725 - YiiQ family protein, at 3,746,992 to 3,747,561
_RS19725
LU632_RS19730: tpiA - triose-phosphate isomerase, at 3,747,682 to 3,748,449
tpiA
Position (kb) 3746
3747
3748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3746.065 kb on + strand, within fpr at 3746.066 kb on - strand, within fpr at 3746.066 kb on - strand, within fpr at 3746.075 kb on + strand, within fpr at 3746.078 kb on + strand, within fpr at 3746.188 kb on + strand, within fpr at 3746.201 kb on + strand, within fpr at 3746.201 kb on + strand, within fpr at 3746.205 kb on + strand, within fpr at 3746.308 kb on - strand, within fpr at 3746.328 kb on + strand, within fpr at 3746.328 kb on + strand, within fpr at 3746.331 kb on + strand, within fpr at 3746.331 kb on + strand, within fpr at 3746.331 kb on + strand, within fpr at 3746.331 kb on + strand, within fpr at 3746.331 kb on + strand, within fpr at 3746.332 kb on - strand, within fpr at 3746.332 kb on - strand, within fpr at 3746.332 kb on - strand, within fpr at 3746.332 kb on - strand, within fpr at 3746.337 kb on - strand, within fpr at 3746.376 kb on - strand, within fpr at 3746.410 kb on - strand at 3746.428 kb on - strand at 3746.444 kb on - strand at 3746.444 kb on - strand at 3746.449 kb on + strand at 3746.473 kb on + strand at 3746.473 kb on + strand at 3746.499 kb on + strand, within LU632_RS19720 at 3746.669 kb on + strand, within LU632_RS19720 at 3746.670 kb on - strand, within LU632_RS19720 at 3746.755 kb on - strand, within LU632_RS19720 at 3746.997 kb on - strand at 3747.136 kb on + strand, within LU632_RS19725 at 3747.245 kb on - strand, within LU632_RS19725 at 3747.282 kb on + strand, within LU632_RS19725 at 3747.355 kb on + strand, within LU632_RS19725 at 3747.355 kb on + strand, within LU632_RS19725 at 3747.355 kb on + strand, within LU632_RS19725 at 3747.355 kb on + strand, within LU632_RS19725 at 3747.393 kb on - strand, within LU632_RS19725 at 3747.393 kb on - strand, within LU632_RS19725 at 3747.537 kb on + strand at 3747.537 kb on + strand at 3747.611 kb on + strand at 3747.613 kb on + strand at 3747.613 kb on + strand at 3747.613 kb on + strand at 3747.627 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 3,746,065 + fpr LU632_RS19715 0.48 +0.6 3,746,066 - fpr LU632_RS19715 0.48 -2.4 3,746,066 - fpr LU632_RS19715 0.48 -0.5 3,746,075 + fpr LU632_RS19715 0.50 +0.7 3,746,078 + fpr LU632_RS19715 0.50 +2.7 3,746,188 + fpr LU632_RS19715 0.65 -0.3 3,746,201 + fpr LU632_RS19715 0.66 +1.1 3,746,201 + fpr LU632_RS19715 0.66 +3.1 3,746,205 + fpr LU632_RS19715 0.67 -0.6 3,746,308 - fpr LU632_RS19715 0.81 +1.7 3,746,328 + fpr LU632_RS19715 0.83 +0.3 3,746,328 + fpr LU632_RS19715 0.83 -0.0 3,746,331 + fpr LU632_RS19715 0.84 +1.1 3,746,331 + fpr LU632_RS19715 0.84 +0.7 3,746,331 + fpr LU632_RS19715 0.84 +1.3 3,746,331 + fpr LU632_RS19715 0.84 -1.1 3,746,331 + fpr LU632_RS19715 0.84 +0.8 3,746,332 - fpr LU632_RS19715 0.84 +0.4 3,746,332 - fpr LU632_RS19715 0.84 +0.4 3,746,332 - fpr LU632_RS19715 0.84 +0.5 3,746,332 - fpr LU632_RS19715 0.84 +1.0 3,746,337 - fpr LU632_RS19715 0.85 -2.9 3,746,376 - fpr LU632_RS19715 0.90 +4.0 3,746,410 - +1.0 3,746,428 - -0.4 3,746,444 - +2.1 3,746,444 - -1.8 3,746,449 + +1.3 3,746,473 + -0.7 3,746,473 + +0.6 3,746,499 + LU632_RS19720 0.11 +0.8 3,746,669 + LU632_RS19720 0.52 -0.6 3,746,670 - LU632_RS19720 0.52 -0.1 3,746,755 - LU632_RS19720 0.73 -1.0 3,746,997 - -0.9 3,747,136 + LU632_RS19725 0.25 +3.1 3,747,245 - LU632_RS19725 0.44 +0.1 3,747,282 + LU632_RS19725 0.51 -1.6 3,747,355 + LU632_RS19725 0.64 -2.0 3,747,355 + LU632_RS19725 0.64 +0.1 3,747,355 + LU632_RS19725 0.64 +0.4 3,747,355 + LU632_RS19725 0.64 -1.4 3,747,393 - LU632_RS19725 0.70 -2.7 3,747,393 - LU632_RS19725 0.70 -0.8 3,747,537 + -0.5 3,747,537 + -1.0 3,747,611 + -2.0 3,747,613 + +0.3 3,747,613 + -2.9 3,747,613 + -0.1 3,747,627 + -1.7
Or see this region's nucleotide sequence