Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trmA and LU632_RS19555 are separated by 374 nucleotides LU632_RS19555 and LU632_RS19560 overlap by 1 nucleotides LU632_RS19560 and LU632_RS19565 are separated by 1 nucleotides
LU632_RS19550: trmA - tRNA (uridine(54)-C5)-methyltransferase TrmA, at 3,707,574 to 3,708,674
trmA
LU632_RS19555: LU632_RS19555 - hypothetical protein, at 3,709,049 to 3,709,222
_RS19555
LU632_RS19560: LU632_RS19560 - hypothetical protein, at 3,709,222 to 3,710,010
_RS19560
LU632_RS19565: LU632_RS19565 - helix-turn-helix domain-containing protein, at 3,710,012 to 3,710,248
_RS19565
Position (kb) 3709
3710 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 3708.110 kb on + strand, within trmA at 3708.110 kb on + strand, within trmA at 3708.111 kb on - strand, within trmA at 3708.111 kb on - strand, within trmA at 3708.111 kb on - strand, within trmA at 3708.162 kb on - strand, within trmA at 3708.162 kb on - strand, within trmA at 3708.240 kb on - strand, within trmA at 3708.264 kb on - strand, within trmA at 3708.321 kb on + strand, within trmA at 3708.322 kb on - strand, within trmA at 3708.338 kb on + strand, within trmA at 3708.445 kb on - strand, within trmA at 3708.533 kb on - strand, within trmA at 3708.534 kb on + strand, within trmA at 3708.534 kb on + strand, within trmA at 3708.535 kb on - strand, within trmA at 3708.536 kb on + strand, within trmA at 3708.633 kb on - strand at 3708.633 kb on - strand at 3708.677 kb on + strand at 3709.116 kb on + strand, within LU632_RS19555 at 3709.117 kb on - strand, within LU632_RS19555 at 3709.223 kb on + strand at 3709.223 kb on + strand at 3709.223 kb on + strand at 3709.224 kb on - strand at 3709.224 kb on - strand at 3709.224 kb on - strand at 3709.224 kb on - strand at 3709.224 kb on - strand at 3709.266 kb on + strand at 3709.267 kb on - strand at 3709.337 kb on + strand, within LU632_RS19560 at 3709.509 kb on - strand, within LU632_RS19560 at 3709.509 kb on - strand, within LU632_RS19560 at 3709.610 kb on - strand, within LU632_RS19560 at 3709.610 kb on - strand, within LU632_RS19560 at 3709.729 kb on + strand, within LU632_RS19560 at 3709.729 kb on + strand, within LU632_RS19560 at 3709.906 kb on + strand, within LU632_RS19560 at 3709.932 kb on + strand at 3709.933 kb on - strand at 3709.987 kb on + strand at 3710.011 kb on - strand at 3710.011 kb on - strand at 3710.050 kb on + strand, within LU632_RS19565 at 3710.064 kb on - strand, within LU632_RS19565 at 3710.064 kb on - strand, within LU632_RS19565
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 3,708,110 + trmA LU632_RS19550 0.49 -0.1 3,708,110 + trmA LU632_RS19550 0.49 +0.7 3,708,111 - trmA LU632_RS19550 0.49 -1.9 3,708,111 - trmA LU632_RS19550 0.49 -1.3 3,708,111 - trmA LU632_RS19550 0.49 +0.2 3,708,162 - trmA LU632_RS19550 0.53 -2.2 3,708,162 - trmA LU632_RS19550 0.53 +1.4 3,708,240 - trmA LU632_RS19550 0.60 -0.0 3,708,264 - trmA LU632_RS19550 0.63 +2.2 3,708,321 + trmA LU632_RS19550 0.68 -1.8 3,708,322 - trmA LU632_RS19550 0.68 -0.1 3,708,338 + trmA LU632_RS19550 0.69 +1.2 3,708,445 - trmA LU632_RS19550 0.79 +0.0 3,708,533 - trmA LU632_RS19550 0.87 -0.3 3,708,534 + trmA LU632_RS19550 0.87 -0.3 3,708,534 + trmA LU632_RS19550 0.87 +0.9 3,708,535 - trmA LU632_RS19550 0.87 +0.7 3,708,536 + trmA LU632_RS19550 0.87 -3.5 3,708,633 - -0.6 3,708,633 - -2.0 3,708,677 + -2.0 3,709,116 + LU632_RS19555 0.39 -1.6 3,709,117 - LU632_RS19555 0.39 -0.3 3,709,223 + -1.0 3,709,223 + -1.6 3,709,223 + -0.2 3,709,224 - +0.7 3,709,224 - +0.6 3,709,224 - +0.8 3,709,224 - +0.7 3,709,224 - -1.2 3,709,266 + -0.7 3,709,267 - -1.0 3,709,337 + LU632_RS19560 0.15 -0.5 3,709,509 - LU632_RS19560 0.36 -1.3 3,709,509 - LU632_RS19560 0.36 -0.9 3,709,610 - LU632_RS19560 0.49 -0.3 3,709,610 - LU632_RS19560 0.49 -0.0 3,709,729 + LU632_RS19560 0.64 +1.4 3,709,729 + LU632_RS19560 0.64 -2.4 3,709,906 + LU632_RS19560 0.87 -4.5 3,709,932 + +0.3 3,709,933 - -1.1 3,709,987 + -0.3 3,710,011 - -1.3 3,710,011 - -0.5 3,710,050 + LU632_RS19565 0.16 -2.0 3,710,064 - LU632_RS19565 0.22 -0.3 3,710,064 - LU632_RS19565 0.22 +1.5
Or see this region's nucleotide sequence