Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18980

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,581,095	+				-2.5
3,581,096	-				+0.1
3,581,294	-				-2.5
3,581,294	-				+0.6
3,581,296	+				+0.1
3,581,303	+				+2.1
3,581,304	-				+1.0
3,581,340	+	aroL	LU632_RS18975	0.15	+0.0
3,581,340	+	aroL	LU632_RS18975	0.15	-0.1
3,581,340	+	aroL	LU632_RS18975	0.15	-0.0
3,581,340	+	aroL	LU632_RS18975	0.15	+1.6
3,581,340	+	aroL	LU632_RS18975	0.15	+0.8
3,581,341	-	aroL	LU632_RS18975	0.15	-0.0
3,581,341	-	aroL	LU632_RS18975	0.15	+1.7
3,581,469	-	aroL	LU632_RS18975	0.40	-1.4
3,581,469	-	aroL	LU632_RS18975	0.40	-1.2
3,581,469	-	aroL	LU632_RS18975	0.40	+0.9
3,581,490	+	aroL	LU632_RS18975	0.44	-2.8
3,581,494	+	aroL	LU632_RS18975	0.44	-2.2
3,581,495	-	aroL	LU632_RS18975	0.45	-1.4
3,581,495	-	aroL	LU632_RS18975	0.45	+0.8
3,581,495	-	aroL	LU632_RS18975	0.45	+1.2
3,581,607	-	aroL	LU632_RS18975	0.66	+2.2
3,581,744	-				-1.1
3,581,770	-				+0.5
3,581,786	-				-0.0
3,581,786	-				+0.3
3,581,786	-				-2.6
3,581,786	-				-1.3
3,581,842	+				-0.7
3,581,843	-				+2.0
3,581,868	-				+0.9
3,582,016	+				-1.8
3,582,058	+				+1.4
3,582,067	-				-0.5
3,582,067	-				+2.7
3,582,114	+				-0.4
3,582,114	+				-2.3
3,582,139	-				+1.2
3,582,227	+		LU632_RS18980	0.19	+0.3
3,582,227	+		LU632_RS18980	0.19	-1.2
3,582,228	-		LU632_RS18980	0.19	+1.0
3,582,228	-		LU632_RS18980	0.19	-2.7
3,582,228	-		LU632_RS18980	0.19	+0.2
3,582,230	+		LU632_RS18980	0.19	+0.3
3,582,230	+		LU632_RS18980	0.19	+0.1
3,582,231	-		LU632_RS18980	0.20	-1.8
3,582,231	-		LU632_RS18980	0.20	+1.8
3,582,277	+		LU632_RS18980	0.26	+0.2
3,582,277	+		LU632_RS18980	0.26	-1.1
3,582,278	-		LU632_RS18980	0.26	-2.6
3,582,354	+		LU632_RS18980	0.37	+1.2
3,582,563	-		LU632_RS18980	0.67	-0.6
3,582,649	+		LU632_RS18980	0.79	+0.6
3,582,650	-		LU632_RS18980	0.79	-0.4
3,582,683	-		LU632_RS18980	0.83	+2.6
3,582,769	+				-0.2
3,582,817	-				+0.6
3,582,883	+				-1.0
3,582,964	+		LU632_RS18985	0.25	-1.5
3,582,964	+		LU632_RS18985	0.25	+0.6
3,582,965	-		LU632_RS18985	0.25	-0.4
3,582,965	-		LU632_RS18985	0.25	+1.2
3,582,967	+		LU632_RS18985	0.25	+0.2
3,582,968	-		LU632_RS18985	0.26	+1.2
3,583,391	+				-0.3
3,583,391	+				-2.8
3,583,391	+				-0.4
3,583,392	-				+0.1
3,583,392	-				-2.0
3,583,392	-				-2.4
3,583,392	-				-2.2
3,583,476	-				-1.4
3,583,482	-				+3.1
3,583,485	+				+0.4
3,583,485	+				+1.1
3,583,498	-				+0.6
3,583,537	-				-0.0
3,583,537	-				-0.6
3,583,537	-				+0.3
3,583,553	+				-1.7
3,583,595	-				+0.4
3,583,636	-				+0.8
3,583,637	+				+0.6
3,583,684	+				+1.7
3,583,741	-				-0.7
3,583,748	+				+1.3
3,583,749	-				-0.1