Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17420

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLU632_RS17415 and LU632_RS17420 are separated by 508 nucleotidesLU632_RS17420 and LU632_RS17425 are separated by 241 nucleotides LU632_RS17415: LU632_RS17415 - Tn3 family transposase, at 3,272,938 to 3,273,531 _RS17415 LU632_RS17420: LU632_RS17420 - phosphatidylinositol-specific phospholipase C domain-containing protein, at 3,274,040 to 3,274,858 _RS17420 LU632_RS17425: LU632_RS17425 - CyaA/EF/ExoY family adenylyl cyclase toxin, at 3,275,100 to 3,281,711 _RS17425 Position (kb) 3274 3275Strain fitness (log2 ratio) -2 -1 0 1 2at 3273.040 kb on - strand, within LU632_RS17415at 3273.434 kb on - strand, within LU632_RS17415at 3273.535 kb on - strandat 3273.612 kb on + strandat 3273.700 kb on + strandat 3274.260 kb on - strand, within LU632_RS17420at 3275.481 kb on - strandat 3275.849 kb on + strand, within LU632_RS17425

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
remove
3,273,040 - LU632_RS17415 0.17 -0.1
3,273,434 - LU632_RS17415 0.84 -1.3
3,273,535 - +2.0
3,273,612 + -1.3
3,273,700 + +0.1
3,274,260 - LU632_RS17420 0.27 -2.5
3,275,481 - -0.4
3,275,849 + LU632_RS17425 0.11 +0.8

Or see this region's nucleotide sequence