Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17175

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,230,988	-		LU632_RS17170	0.40	+0.9
3,231,060	+		LU632_RS17170	0.44	+1.8
3,231,060	+		LU632_RS17170	0.44	-0.2
3,231,061	-		LU632_RS17170	0.45	-0.1
3,231,061	-		LU632_RS17170	0.45	+0.3
3,231,061	-		LU632_RS17170	0.45	-0.9
3,231,061	-		LU632_RS17170	0.45	+1.1
3,231,061	-		LU632_RS17170	0.45	+0.3
3,231,062	+		LU632_RS17170	0.45	-0.7
3,231,062	+		LU632_RS17170	0.45	-0.4
3,231,062	+		LU632_RS17170	0.45	+1.1
3,231,062	+		LU632_RS17170	0.45	-0.4
3,231,062	+		LU632_RS17170	0.45	+1.3
3,231,062	+		LU632_RS17170	0.45	+0.3
3,231,062	+		LU632_RS17170	0.45	-0.7
3,231,063	-		LU632_RS17170	0.45	-1.0
3,231,063	-		LU632_RS17170	0.45	+1.2
3,231,063	-		LU632_RS17170	0.45	-1.9
3,231,114	-		LU632_RS17170	0.48	-2.3
3,231,555	-		LU632_RS17170	0.75	+0.8
3,231,652	-		LU632_RS17170	0.80	-0.3
3,231,652	-		LU632_RS17170	0.80	-1.4
3,231,795	-		LU632_RS17170	0.89	+2.0
3,231,798	+		LU632_RS17170	0.89	+1.4
3,231,798	+		LU632_RS17170	0.89	-0.5
3,231,799	-		LU632_RS17170	0.89	+0.3
3,231,936	+				-0.6
3,232,055	+		LU632_RS17175	0.33	+1.3
3,232,056	-		LU632_RS17175	0.34	+0.2
3,232,100	+		LU632_RS17175	0.50	-0.8
3,232,220	+				-0.1
3,232,220	+				+0.8
3,232,220	+				-0.9
3,232,221	-				+2.4
3,232,221	-				+0.8
3,232,222	+				+0.1
3,232,222	+				-1.5
3,232,223	-				-0.7
3,232,223	-				-0.6
3,232,223	-				-0.7
3,232,229	-				-0.4
3,232,229	-				-1.1
3,232,229	-				+1.1
3,232,229	-				-1.2
3,232,441	-		LU632_RS17180	0.10	-0.3
3,232,587	+		LU632_RS17180	0.18	+0.1
3,232,588	-		LU632_RS17180	0.18	-2.0
3,232,588	-		LU632_RS17180	0.18	+1.0
3,232,660	+		LU632_RS17180	0.21	-0.4
3,232,707	-		LU632_RS17180	0.24	-0.1
3,232,787	-		LU632_RS17180	0.28	+0.0
3,232,806	+		LU632_RS17180	0.29	+1.3
3,232,982	-		LU632_RS17180	0.38	+0.4
3,233,045	+		LU632_RS17180	0.41	-3.2
3,233,045	+		LU632_RS17180	0.41	-0.0
3,233,119	+		LU632_RS17180	0.45	-0.5