Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17000

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS16995 and LU632_RS17000 are separated by 52 nucleotidesLU632_RS17000 and LU632_RS17005 are separated by 40 nucleotidesLU632_RS17005 and tnpA are separated by 170 nucleotidestnpA and LU632_RS17015 are separated by 143 nucleotides LU632_RS16995: LU632_RS16995 - IS481 family transposase, at 3,205,092 to 3,206,009 _RS16995 LU632_RS17000: LU632_RS17000 - IS3 family transposase, at 3,206,062 to 3,207,182 _RS17000 LU632_RS17005: LU632_RS17005 - helix-turn-helix domain-containing protein, at 3,207,223 to 3,207,357 _RS17005 LU632_RS17010: tnpA - IS200/IS605 family transposase, at 3,207,528 to 3,207,968 tnpA LU632_RS17015: LU632_RS17015 - RnfH family protein, at 3,208,112 to 3,208,399 _RS17015 Position (kb) 3206 3207 3208Strain fitness (log2 ratio) -2 -1 0 1at 3207.189 kb on + strandat 3207.189 kb on + strandat 3207.193 kb on + strandat 3207.193 kb on + strandat 3208.088 kb on + strandat 3208.095 kb on + strandat 3208.157 kb on - strand, within LU632_RS17015

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
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3,207,189 + -0.3
3,207,189 + -1.5
3,207,193 + -0.5
3,207,193 + +1.0
3,208,088 + -0.7
3,208,095 + -1.3
3,208,157 - LU632_RS17015 0.16 -1.9

Or see this region's nucleotide sequence