Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16300

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,081,592	+				+0.7
3,081,593	-				-1.7
3,081,593	-				-1.5
3,081,593	-				+0.1
3,081,593	-				-0.5
3,081,612	-				-0.6
3,081,612	-				-3.5
3,081,613	+				+0.5
3,081,613	+				-1.0
3,081,613	+				-1.1
3,081,681	+				+0.3
3,081,756	-				-0.0
3,081,785	+				+0.9
3,082,189	+				-0.5
3,082,190	-				-2.9
3,082,219	-		LU632_RS16285	0.10	+0.4
3,082,219	-		LU632_RS16285	0.10	-0.1
3,082,374	+				-1.1
3,082,374	+				-0.2
3,082,374	+				-1.5
3,082,375	-				-0.8
3,082,402	+				+1.1
3,082,403	-				+2.9
3,082,403	-				+0.4
3,082,406	-				-0.0
3,082,502	+				+1.5
3,082,503	-				-0.2
3,082,503	-				-2.2
3,082,524	+				-0.4
3,082,524	+				-2.1
3,082,526	+				+0.4
3,082,527	-				+0.7
3,082,552	+				-3.1
3,082,552	+				+1.0
3,082,555	+				-0.6
3,083,831	-				+0.7
3,083,884	+				-0.1
3,083,884	+				+1.2
3,083,884	+				+0.8
3,083,884	+				+0.4
3,083,885	-				+0.7
3,083,885	-				+0.5
3,083,913	-				-2.7
3,083,946	+				+0.3
3,084,055	-				+0.5
3,084,099	+				+2.3
3,084,100	-				-0.2
3,084,100	-				-0.8
3,084,190	-	miaB	LU632_RS16305	0.16	+0.4
3,084,263	+	miaB	LU632_RS16305	0.21	+1.2
3,084,433	-	miaB	LU632_RS16305	0.33	-1.1
3,084,437	-	miaB	LU632_RS16305	0.34	-0.8
3,084,441	+	miaB	LU632_RS16305	0.34	-1.1
3,084,441	+	miaB	LU632_RS16305	0.34	+2.7
3,084,590	-	miaB	LU632_RS16305	0.44	-1.3
3,084,590	-	miaB	LU632_RS16305	0.44	-0.5
3,084,591	+	miaB	LU632_RS16305	0.44	-0.3
3,084,602	+	miaB	LU632_RS16305	0.45	-0.3
3,084,602	+	miaB	LU632_RS16305	0.45	+0.2
3,084,603	-	miaB	LU632_RS16305	0.45	-1.7