Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16265

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,078,893	-		LU632_RS16260	0.12	-1.5
3,078,895	+		LU632_RS16260	0.12	+0.7
3,078,932	+		LU632_RS16260	0.17	-0.6
3,078,933	-		LU632_RS16260	0.17	+0.5
3,078,933	-		LU632_RS16260	0.17	-1.2
3,079,007	+		LU632_RS16260	0.27	+0.3
3,079,100	+		LU632_RS16260	0.39	-0.6
3,079,100	+		LU632_RS16260	0.39	+0.3
3,079,100	+		LU632_RS16260	0.39	+0.6
3,079,101	-		LU632_RS16260	0.40	-0.3
3,079,101	-		LU632_RS16260	0.40	-1.2
3,079,101	-		LU632_RS16260	0.40	+1.7
3,079,114	+		LU632_RS16260	0.41	+0.5
3,079,115	-		LU632_RS16260	0.41	+0.2
3,079,130	-		LU632_RS16260	0.43	+1.1
3,079,167	-		LU632_RS16260	0.48	+1.3
3,079,168	+		LU632_RS16260	0.48	-0.3
3,079,186	+		LU632_RS16260	0.51	+1.2
3,079,186	+		LU632_RS16260	0.51	-0.6
3,079,240	+		LU632_RS16260	0.58	+1.3
3,079,319	+		LU632_RS16260	0.69	+1.5
3,079,477	+		LU632_RS16260	0.90	-0.2
3,079,692	+				+0.2
3,079,779	+				-0.1
3,079,779	+				-0.4
3,081,487	+				-1.3
3,081,487	+				-2.0
3,081,499	+				+0.8
3,081,592	+				+0.7
3,081,593	-				-1.7
3,081,593	-				-1.5
3,081,593	-				+0.1
3,081,593	-				-0.5
3,081,612	-				-0.6
3,081,612	-				-3.5
3,081,613	+				+0.5
3,081,613	+				-1.0
3,081,613	+				-1.1
3,081,681	+				+0.3
3,081,756	-				-0.0
3,081,785	+				+0.9
3,082,189	+				-0.5
3,082,190	-				-2.9
3,082,219	-		LU632_RS16285	0.10	+0.4
3,082,219	-		LU632_RS16285	0.10	-0.1
3,082,374	+				-1.1
3,082,374	+				-0.2
3,082,374	+				-1.5
3,082,375	-				-0.8
3,082,402	+				+1.1
3,082,403	-				+2.9
3,082,403	-				+0.4
3,082,406	-				-0.0