Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16165

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,056,234	-		LU632_RS16160	0.88	-1.1
3,056,351	-				-1.5
3,056,553	+				+1.2
3,056,553	+				-0.3
3,056,554	-				+0.2
3,056,584	+				-1.3
3,056,595	+				+0.5
3,056,595	+				-1.3
3,056,630	+				+0.9
3,056,630	+				+0.3
3,056,630	+				-0.2
3,056,633	-				-0.6
3,056,670	-				+0.2
3,056,684	-				-0.2
3,056,684	-				-1.2
3,056,697	+				-0.9
3,056,712	-				-0.5
3,056,783	+				-1.4
3,056,784	-				+0.8
3,056,784	-				+1.1
3,056,801	+				-1.3
3,056,801	+				-1.3
3,056,802	-				-0.4
3,056,803	+				-0.3
3,056,803	+				-0.1
3,056,803	+				+1.3
3,056,804	-				-1.5
3,056,804	-				-0.1
3,056,804	-				-1.9
3,056,806	-				-0.4
3,056,806	-				+0.1
3,056,806	-				+0.4
3,056,869	-				+1.0
3,056,903	-				+0.2
3,056,903	-				-1.0
3,056,903	-				-0.6
3,056,937	+				+1.3
3,057,004	+				-1.7
3,057,036	+				-1.4
3,057,036	+				-2.1
3,057,052	-				+0.2
3,057,052	-				-0.3
3,057,106	+				+0.5
3,057,107	-				-1.1
3,057,107	-				+0.0
3,057,107	-				-0.8
3,057,146	-				+1.7
3,057,146	-				+0.7
3,057,157	+				-0.4
3,057,162	+				+0.4
3,057,163	-				+0.8
3,057,390	+	kdpE	LU632_RS16165	0.34	-0.8
3,057,390	+	kdpE	LU632_RS16165	0.34	-1.6
3,057,390	+	kdpE	LU632_RS16165	0.34	-1.2
3,057,391	-	kdpE	LU632_RS16165	0.34	-1.3
3,057,392	-	kdpE	LU632_RS16165	0.34	-0.3
3,057,419	-	kdpE	LU632_RS16165	0.38	+0.7
3,057,486	+	kdpE	LU632_RS16165	0.48	-1.9
3,057,734	+	kdpE	LU632_RS16165	0.84	-0.8
3,057,746	+	kdpE	LU632_RS16165	0.86	+2.8
3,057,746	+	kdpE	LU632_RS16165	0.86	-0.9
3,057,746	+	kdpE	LU632_RS16165	0.86	-0.4
3,057,746	+	kdpE	LU632_RS16165	0.86	+1.2
3,057,877	+				-0.3
3,057,877	+				-0.2
3,057,880	+				-0.2
3,057,897	-				+0.6
3,057,897	-				+0.2
3,057,965	+				-2.5
3,057,965	+				+0.5
3,057,965	+				-1.4
3,057,966	-				-0.0
3,057,966	-				+0.3
3,057,970	+				-2.6
3,057,970	+				+1.5
3,057,970	+				+0.5
3,057,971	-				+0.4
3,057,971	-				+1.2
3,058,019	+				-0.8