Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16095

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,039,871	-	odhB	LU632_RS16090	0.19	-3.4
3,039,871	-	odhB	LU632_RS16090	0.19	-1.7
3,040,227	-	odhB	LU632_RS16090	0.48	-3.7
3,040,482	-	odhB	LU632_RS16090	0.69	-3.9
3,040,482	-	odhB	LU632_RS16090	0.69	+0.5
3,040,842	-				-1.8
3,040,931	-				+0.5
3,040,931	-				-4.1
3,040,938	-				-0.8
3,040,977	-				-3.8
3,041,076	-				-1.8
3,041,076	-				-2.8
3,041,197	-	sucA	LU632_RS16095	0.12	-1.1
3,041,758	-	sucA	LU632_RS16095	0.32	-0.5
3,041,758	-	sucA	LU632_RS16095	0.32	-2.6
3,042,214	-	sucA	LU632_RS16095	0.48	-2.0
3,042,454	-	sucA	LU632_RS16095	0.56	-2.7
3,042,560	-	sucA	LU632_RS16095	0.60	-3.6
3,042,784	-	sucA	LU632_RS16095	0.68	-2.9
3,042,784	-	sucA	LU632_RS16095	0.68	-2.5
3,042,784	-	sucA	LU632_RS16095	0.68	-2.6
3,042,788	-	sucA	LU632_RS16095	0.68	-2.2
3,043,163	-	sucA	LU632_RS16095	0.82	-2.5
3,043,189	-	sucA	LU632_RS16095	0.83	-1.7
3,043,229	-	sucA	LU632_RS16095	0.84	-2.1
3,043,231	+	sucA	LU632_RS16095	0.84	-2.1
3,043,257	-	sucA	LU632_RS16095	0.85	-2.4
3,043,257	-	sucA	LU632_RS16095	0.85	-2.9
3,043,600	-				-3.0
3,043,753	+				-3.2
3,043,754	-				-3.3
3,043,775	-				-3.2
3,043,775	-				-2.9
3,043,775	-				-2.8
3,043,825	-				-3.5
3,043,890	-				-4.8
3,043,921	-				-3.5
3,043,921	-				+0.3
3,043,974	+				-3.9
3,043,989	-				-3.8
3,044,031	+		LU632_RS16100	0.10	-1.5
3,044,031	+		LU632_RS16100	0.10	-2.8
3,044,031	+		LU632_RS16100	0.10	-4.5
3,044,032	-		LU632_RS16100	0.10	+1.5
3,044,229	-		LU632_RS16100	0.38	-5.0
3,044,236	+		LU632_RS16100	0.39	-0.8
3,044,236	+		LU632_RS16100	0.39	-3.0
3,044,237	-		LU632_RS16100	0.39	-3.5
3,044,238	+		LU632_RS16100	0.39	-4.7
3,044,478	-		LU632_RS16100	0.72	-4.2
3,044,634	+				-4.8