Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15905

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
3,005,648	+				+1.6
3,005,651	+				+0.6
3,005,651	+				+0.1
3,005,651	+				+0.4
3,005,879	+		LU632_RS15900	0.79	-0.8
3,006,077	-				-2.3
3,006,206	+				-0.9
3,006,207	-				+1.8
3,006,207	-				-0.8
3,006,207	-				-2.8
3,006,252	-				-1.3
3,006,252	-				-2.0
3,006,415	-	galT	LU632_RS15905	0.20	+1.5
3,006,558	-	galT	LU632_RS15905	0.33	-0.6
3,006,763	+	galT	LU632_RS15905	0.53	-3.9
3,006,764	-	galT	LU632_RS15905	0.53	-4.5
3,006,775	-	galT	LU632_RS15905	0.54	-0.8
3,006,931	+	galT	LU632_RS15905	0.69	-2.8
3,007,065	-	galT	LU632_RS15905	0.82	-2.1
3,007,065	-	galT	LU632_RS15905	0.82	+0.5
3,007,065	-	galT	LU632_RS15905	0.82	-1.2
3,007,230	-				-1.5
3,007,267	-				-2.0
3,007,321	+				-1.5
3,007,321	+				+0.8
3,007,322	-				-1.1
3,007,373	-				-0.8
3,007,373	-				+1.4
3,007,373	-				+1.5
3,007,373	-				-0.8
3,007,541	+	galK	LU632_RS15910	0.25	-2.6
3,007,542	-	galK	LU632_RS15910	0.25	-2.0
3,007,542	-	galK	LU632_RS15910	0.25	-1.4
3,007,542	-	galK	LU632_RS15910	0.25	-1.1
3,007,600	+	galK	LU632_RS15910	0.30	-1.3
3,007,786	-	galK	LU632_RS15910	0.46	+1.5
3,007,925	+	galK	LU632_RS15910	0.58	+0.3
3,007,926	-	galK	LU632_RS15910	0.58	-1.6
3,007,926	-	galK	LU632_RS15910	0.58	-0.1
3,008,197	+	galK	LU632_RS15910	0.82	-2.4