Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15155

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS15150 and LU632_RS15155 are separated by 5 nucleotidesLU632_RS15155 and LU632_RS15160 overlap by 4 nucleotidesLU632_RS15160 and LU632_RS15165 are separated by 15 nucleotidesLU632_RS15165 and LU632_RS15170 overlap by 17 nucleotidesLU632_RS15170 and LU632_RS15175 are separated by 225 nucleotides LU632_RS15150: LU632_RS15150 - DNA polymerase I, at 2,870,221 to 2,872,328 _RS15150 LU632_RS15155: LU632_RS15155 - hypothetical protein, at 2,872,334 to 2,873,011 _RS15155 LU632_RS15160: LU632_RS15160 - hypothetical protein, at 2,873,008 to 2,873,220 _RS15160 LU632_RS15165: LU632_RS15165 - ANR family transcriptional regulator, at 2,873,236 to 2,873,466 _RS15165 LU632_RS15170: LU632_RS15170 - VRR-NUC domain-containing protein, at 2,873,450 to 2,873,752 _RS15170 LU632_RS15175: LU632_RS15175 - DEAD/DEAH box helicase, at 2,873,978 to 2,875,285 _RS15175 Position (kb) 2872 2873 2874Strain fitness (log2 ratio) -2 -1 0 1at 2871.384 kb on - strand, within LU632_RS15150at 2871.618 kb on + strand, within LU632_RS15150at 2871.661 kb on - strand, within LU632_RS15150at 2871.718 kb on + strand, within LU632_RS15150at 2871.742 kb on - strand, within LU632_RS15150at 2871.792 kb on + strand, within LU632_RS15150at 2871.793 kb on - strand, within LU632_RS15150at 2871.793 kb on - strand, within LU632_RS15150at 2871.793 kb on - strand, within LU632_RS15150at 2871.813 kb on - strand, within LU632_RS15150at 2871.905 kb on - strand, within LU632_RS15150

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
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2,871,384 - LU632_RS15150 0.55 -0.8
2,871,618 + LU632_RS15150 0.66 +0.5
2,871,661 - LU632_RS15150 0.68 -0.7
2,871,718 + LU632_RS15150 0.71 -1.1
2,871,742 - LU632_RS15150 0.72 +0.1
2,871,792 + LU632_RS15150 0.75 +0.9
2,871,793 - LU632_RS15150 0.75 -1.8
2,871,793 - LU632_RS15150 0.75 +0.5
2,871,793 - LU632_RS15150 0.75 +1.7
2,871,813 - LU632_RS15150 0.76 +1.7
2,871,905 - LU632_RS15150 0.80 -1.3

Or see this region's nucleotide sequence