Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS15150 and LU632_RS15155 are separated by 5 nucleotides LU632_RS15155 and LU632_RS15160 overlap by 4 nucleotides LU632_RS15160 and LU632_RS15165 are separated by 15 nucleotides LU632_RS15165 and LU632_RS15170 overlap by 17 nucleotides LU632_RS15170 and LU632_RS15175 are separated by 225 nucleotides
LU632_RS15150: LU632_RS15150 - DNA polymerase I, at 2,870,221 to 2,872,328
_RS15150
LU632_RS15155: LU632_RS15155 - hypothetical protein, at 2,872,334 to 2,873,011
_RS15155
LU632_RS15160: LU632_RS15160 - hypothetical protein, at 2,873,008 to 2,873,220
_RS15160
LU632_RS15165: LU632_RS15165 - ANR family transcriptional regulator, at 2,873,236 to 2,873,466
_RS15165
LU632_RS15170: LU632_RS15170 - VRR-NUC domain-containing protein, at 2,873,450 to 2,873,752
_RS15170
LU632_RS15175: LU632_RS15175 - DEAD/DEAH box helicase, at 2,873,978 to 2,875,285
_RS15175
Position (kb)
2872
2873
2874 Strain fitness (log2 ratio)
-2
-1
0
1 at 2871.384 kb on - strand, within LU632_RS15150 at 2871.618 kb on + strand, within LU632_RS15150 at 2871.661 kb on - strand, within LU632_RS15150 at 2871.718 kb on + strand, within LU632_RS15150 at 2871.742 kb on - strand, within LU632_RS15150 at 2871.792 kb on + strand, within LU632_RS15150 at 2871.793 kb on - strand, within LU632_RS15150 at 2871.793 kb on - strand, within LU632_RS15150 at 2871.793 kb on - strand, within LU632_RS15150 at 2871.813 kb on - strand, within LU632_RS15150 at 2871.905 kb on - strand, within LU632_RS15150
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 2,871,384 - LU632_RS15150 0.55 -0.8 2,871,618 + LU632_RS15150 0.66 +0.5 2,871,661 - LU632_RS15150 0.68 -0.7 2,871,718 + LU632_RS15150 0.71 -1.1 2,871,742 - LU632_RS15150 0.72 +0.1 2,871,792 + LU632_RS15150 0.75 +0.9 2,871,793 - LU632_RS15150 0.75 -1.8 2,871,793 - LU632_RS15150 0.75 +0.5 2,871,793 - LU632_RS15150 0.75 +1.7 2,871,813 - LU632_RS15150 0.76 +1.7 2,871,905 - LU632_RS15150 0.80 -1.3
Or see this region's nucleotide sequence