Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12955

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
2,468,724	+				+0.3
2,468,725	-				+1.3
2,468,749	+				+0.3
2,468,749	+				-0.6
2,468,749	+				+0.6
2,468,752	-				+4.8
2,468,769	+				-0.3
2,468,769	+				-0.9
2,468,975	+	xthA	LU632_RS12950	0.15	-1.7
2,468,975	+	xthA	LU632_RS12950	0.15	-0.7
2,468,975	+	xthA	LU632_RS12950	0.15	+3.7
2,468,975	+	xthA	LU632_RS12950	0.15	+0.6
2,468,975	+	xthA	LU632_RS12950	0.15	-0.9
2,468,975	+	xthA	LU632_RS12950	0.15	+3.0
2,468,976	-	xthA	LU632_RS12950	0.15	+1.0
2,468,976	-	xthA	LU632_RS12950	0.15	-0.9
2,468,976	-	xthA	LU632_RS12950	0.15	+0.1
2,468,976	-	xthA	LU632_RS12950	0.15	+0.6
2,469,021	+	xthA	LU632_RS12950	0.20	-0.6
2,469,022	-	xthA	LU632_RS12950	0.21	+1.1
2,469,042	+	xthA	LU632_RS12950	0.23	-0.8
2,469,181	-	xthA	LU632_RS12950	0.40	-0.8
2,469,259	-	xthA	LU632_RS12950	0.50	-1.2
2,469,292	+	xthA	LU632_RS12950	0.54	+1.3
2,469,293	-	xthA	LU632_RS12950	0.54	+0.2
2,469,296	+	xthA	LU632_RS12950	0.55	+2.0
2,469,296	+	xthA	LU632_RS12950	0.55	+0.4
2,469,314	+	xthA	LU632_RS12950	0.57	+0.9
2,469,315	-	xthA	LU632_RS12950	0.57	+0.3
2,469,315	-	xthA	LU632_RS12950	0.57	-0.5
2,469,446	+	xthA	LU632_RS12950	0.73	+1.9
2,469,446	+	xthA	LU632_RS12950	0.73	+0.0
2,469,447	-	xthA	LU632_RS12950	0.73	+0.7
2,469,506	+	xthA	LU632_RS12950	0.81	+4.5
2,469,506	+	xthA	LU632_RS12950	0.81	+1.7
2,469,597	+				+1.5
2,469,598	-				-0.5
2,469,682	-				+1.3
2,469,699	-				-1.8
2,469,738	-		LU632_RS12955	0.12	+1.3
2,469,763	+		LU632_RS12955	0.19	+0.9
2,469,769	+		LU632_RS12955	0.21	-1.0
2,469,769	+		LU632_RS12955	0.21	-2.7
2,469,770	-		LU632_RS12955	0.21	-0.0
2,469,801	+		LU632_RS12955	0.30	+0.9
2,469,802	-		LU632_RS12955	0.31	-0.9
2,469,804	-		LU632_RS12955	0.31	+0.9
2,469,819	-		LU632_RS12955	0.36	+2.0
2,469,888	+		LU632_RS12955	0.56	+1.9
2,469,889	-		LU632_RS12955	0.56	+0.5
2,469,889	-		LU632_RS12955	0.56	+1.1
2,469,889	-		LU632_RS12955	0.56	+0.1
2,469,889	-		LU632_RS12955	0.56	-1.1
2,469,892	+		LU632_RS12955	0.57	-0.6
2,469,892	+		LU632_RS12955	0.57	+0.3
2,469,892	+		LU632_RS12955	0.57	-0.3
2,469,892	+		LU632_RS12955	0.57	+4.4
2,469,892	+		LU632_RS12955	0.57	+1.3
2,469,893	-		LU632_RS12955	0.57	-0.6
2,469,893	-		LU632_RS12955	0.57	-0.9
2,469,917	+		LU632_RS12955	0.64	+0.3
2,469,939	+		LU632_RS12955	0.71	-1.8
2,469,966	-		LU632_RS12955	0.79	-1.8
2,470,024	-				-3.3
2,470,029	+				+1.3
2,470,039	+				+0.3
2,470,040	-				-0.8
2,470,064	+				-2.6
2,470,065	-				-1.9
2,470,065	-				+1.7
2,470,175	+				-0.9
2,470,187	-				-1.0
2,470,190	+				+0.3
2,470,190	+				-0.3
2,470,307	+		LU632_RS12960	0.14	+0.6
2,470,307	+		LU632_RS12960	0.14	-2.2
2,470,308	-		LU632_RS12960	0.14	-2.7
2,470,310	-		LU632_RS12960	0.14	-3.6
2,470,322	+		LU632_RS12960	0.15	-0.5
2,470,443	-		LU632_RS12960	0.21	-0.9
2,470,458	+		LU632_RS12960	0.22	-1.7
2,470,459	-		LU632_RS12960	0.22	+0.6
2,470,461	+		LU632_RS12960	0.22	-1.2
2,470,720	+		LU632_RS12960	0.36	+0.8
2,470,721	-		LU632_RS12960	0.36	+0.4
2,470,741	+		LU632_RS12960	0.37	+1.1
2,470,745	+		LU632_RS12960	0.37	+0.6
2,470,796	+		LU632_RS12960	0.40	+3.1
2,470,799	+		LU632_RS12960	0.40	+1.1
2,470,871	-		LU632_RS12960	0.44	-0.2
2,470,895	+		LU632_RS12960	0.45	-0.3
2,470,927	+		LU632_RS12960	0.47	-0.7
2,470,941	+		LU632_RS12960	0.47	-1.4
2,470,946	-		LU632_RS12960	0.48	-1.3
2,470,966	+		LU632_RS12960	0.49	+0.0
2,470,967	-		LU632_RS12960	0.49	-1.8
2,470,979	+		LU632_RS12960	0.49	+0.6
2,470,980	-		LU632_RS12960	0.49	-2.7