Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11995

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
2,276,422	+				+0.9
2,276,490	+				+1.9
2,276,491	-				+1.0
2,276,492	+				+0.6
2,276,573	+				-1.0
2,276,574	-				-0.2
2,276,574	-				-0.2
2,276,578	-				-0.1
2,276,581	-				+0.9
2,276,593	+				-2.6
2,276,699	-				-0.6
2,277,095	+	dbpA	LU632_RS11995	0.31	+0.8
2,277,095	+	dbpA	LU632_RS11995	0.31	+0.9
2,277,096	-	dbpA	LU632_RS11995	0.31	-0.3
2,277,260	-	dbpA	LU632_RS11995	0.43	+0.4
2,277,280	-	dbpA	LU632_RS11995	0.45	-0.9
2,277,280	-	dbpA	LU632_RS11995	0.45	+0.3
2,277,291	+	dbpA	LU632_RS11995	0.46	-2.5
2,277,346	+	dbpA	LU632_RS11995	0.50	+0.8
2,277,403	+	dbpA	LU632_RS11995	0.54	+0.1
2,277,469	+	dbpA	LU632_RS11995	0.58	-1.4
2,277,524	+	dbpA	LU632_RS11995	0.62	-1.2
2,277,525	-	dbpA	LU632_RS11995	0.63	+0.1
2,277,525	-	dbpA	LU632_RS11995	0.63	+1.4
2,277,669	+	dbpA	LU632_RS11995	0.73	+0.3
2,277,670	-	dbpA	LU632_RS11995	0.73	-0.3
2,277,846	+	dbpA	LU632_RS11995	0.86	+1.3
2,277,849	+	dbpA	LU632_RS11995	0.86	+1.0
2,277,850	-	dbpA	LU632_RS11995	0.86	+1.0
2,277,971	+				+0.5
2,278,098	+				-1.5
2,278,099	-				-1.1
2,278,099	-				-0.4
2,278,101	+				-1.4
2,278,119	+				-0.1
2,278,120	-				+2.0
2,278,120	-				-2.3
2,278,146	-				+0.5
2,278,157	+				-0.6
2,278,157	+				+1.3
2,278,239	+				+0.0
2,278,315	+				-0.1
2,278,316	-				+0.8
2,278,316	-				+0.7
2,278,316	-				+0.9
2,278,316	-				+0.7
2,278,378	+				+0.7
2,278,379	-				+1.3
2,278,380	+				+1.2
2,278,381	-				-1.1
2,278,381	-				+2.4
2,278,384	+				+0.4
2,278,384	+				-1.9
2,278,385	-				-2.4
2,278,409	+				+2.0
2,278,443	+				+0.9
2,278,443	+				-0.1
2,278,444	-				+1.3
2,278,538	-				-0.4
2,278,560	+				-0.9
2,278,920	+		LU632_RS12000	0.35	+0.1
2,278,920	+		LU632_RS12000	0.35	+0.6
2,278,920	+		LU632_RS12000	0.35	-0.1
2,278,921	-		LU632_RS12000	0.35	-0.5
2,278,978	-		LU632_RS12000	0.42	-0.1
2,279,025	+		LU632_RS12000	0.47	+0.7
2,279,025	+		LU632_RS12000	0.47	-1.7