Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11895

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS11870 and LU632_RS11875 are separated by 2 nucleotidesLU632_RS11875 and LU632_RS11880 are separated by 77 nucleotidesLU632_RS11880 and LU632_RS11885 overlap by 20 nucleotidesLU632_RS11885 and LU632_RS11890 are separated by 1 nucleotidesLU632_RS11890 and LU632_RS11895 overlap by 22 nucleotidesLU632_RS11895 and LU632_RS11900 are separated by 114 nucleotides LU632_RS11870: LU632_RS11870 - DUF2786 domain-containing protein, at 2,249,572 to 2,250,054 _RS11870 LU632_RS11875: LU632_RS11875 - hypothetical protein, at 2,250,057 to 2,250,278 _RS11875 LU632_RS11880: LU632_RS11880 - hypothetical protein, at 2,250,356 to 2,250,547 _RS11880 LU632_RS11885: LU632_RS11885 - ANR family transcriptional regulator, at 2,250,528 to 2,250,761 _RS11885 LU632_RS11890: LU632_RS11890 - DUF3164 family protein, at 2,250,763 to 2,250,963 _RS11890 LU632_RS11895: LU632_RS11895 - hypothetical protein, at 2,250,942 to 2,251,265 _RS11895 LU632_RS11900: LU632_RS11900 - IS1 family transposase, at 2,251,380 to 2,252,077 _RS11900 Position (kb) 2250 2251 2252Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2249.991 kb on + strand, within LU632_RS11870at 2249.992 kb on - strand, within LU632_RS11870at 2249.997 kb on + strand, within LU632_RS11870at 2249.997 kb on + strand, within LU632_RS11870at 2250.039 kb on - strandat 2250.039 kb on - strandat 2250.167 kb on + strand, within LU632_RS11875at 2250.167 kb on + strand, within LU632_RS11875at 2250.167 kb on + strand, within LU632_RS11875at 2250.202 kb on + strand, within LU632_RS11875at 2250.209 kb on + strand, within LU632_RS11875at 2250.215 kb on + strand, within LU632_RS11875at 2250.237 kb on - strand, within LU632_RS11875at 2250.239 kb on + strand, within LU632_RS11875at 2250.332 kb on + strandat 2250.333 kb on - strandat 2250.726 kb on - strand, within LU632_RS11885at 2250.756 kb on - strandat 2250.790 kb on - strand, within LU632_RS11890at 2250.831 kb on + strand, within LU632_RS11890at 2250.833 kb on + strand, within LU632_RS11890at 2250.833 kb on + strand, within LU632_RS11890at 2250.834 kb on - strand, within LU632_RS11890at 2250.834 kb on - strand, within LU632_RS11890at 2250.907 kb on - strand, within LU632_RS11890at 2250.910 kb on - strand, within LU632_RS11890at 2250.927 kb on + strand, within LU632_RS11890at 2250.930 kb on + strand, within LU632_RS11890at 2250.930 kb on + strand, within LU632_RS11890at 2250.931 kb on - strand, within LU632_RS11890at 2250.948 kb on + strandat 2251.004 kb on + strand, within LU632_RS11895at 2251.103 kb on + strand, within LU632_RS11895at 2251.142 kb on - strand, within LU632_RS11895at 2251.166 kb on - strand, within LU632_RS11895at 2251.166 kb on - strand, within LU632_RS11895at 2251.209 kb on - strand, within LU632_RS11895at 2251.219 kb on + strand, within LU632_RS11895at 2251.285 kb on + strandat 2251.355 kb on - strandat 2251.381 kb on + strandat 2252.107 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
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2,249,991 + LU632_RS11870 0.87 -0.9
2,249,992 - LU632_RS11870 0.87 +0.3
2,249,997 + LU632_RS11870 0.88 -0.3
2,249,997 + LU632_RS11870 0.88 -0.0
2,250,039 - +1.6
2,250,039 - -0.3
2,250,167 + LU632_RS11875 0.50 -1.5
2,250,167 + LU632_RS11875 0.50 -1.6
2,250,167 + LU632_RS11875 0.50 +1.6
2,250,202 + LU632_RS11875 0.65 -2.2
2,250,209 + LU632_RS11875 0.68 +0.4
2,250,215 + LU632_RS11875 0.71 -0.3
2,250,237 - LU632_RS11875 0.81 +0.2
2,250,239 + LU632_RS11875 0.82 +0.4
2,250,332 + +0.9
2,250,333 - +0.1
2,250,726 - LU632_RS11885 0.85 +1.3
2,250,756 - +1.9
2,250,790 - LU632_RS11890 0.13 +0.5
2,250,831 + LU632_RS11890 0.34 -0.4
2,250,833 + LU632_RS11890 0.35 +1.3
2,250,833 + LU632_RS11890 0.35 +2.2
2,250,834 - LU632_RS11890 0.35 +1.1
2,250,834 - LU632_RS11890 0.35 -2.4
2,250,907 - LU632_RS11890 0.72 +0.6
2,250,910 - LU632_RS11890 0.73 +5.0
2,250,927 + LU632_RS11890 0.82 -0.2
2,250,930 + LU632_RS11890 0.83 +0.5
2,250,930 + LU632_RS11890 0.83 -0.3
2,250,931 - LU632_RS11890 0.84 +1.3
2,250,948 + +0.6
2,251,004 + LU632_RS11895 0.19 -0.9
2,251,103 + LU632_RS11895 0.50 -1.5
2,251,142 - LU632_RS11895 0.62 -0.8
2,251,166 - LU632_RS11895 0.69 -0.7
2,251,166 - LU632_RS11895 0.69 +0.1
2,251,209 - LU632_RS11895 0.82 -0.2
2,251,219 + LU632_RS11895 0.85 +0.5
2,251,285 + +0.5
2,251,355 - +0.4
2,251,381 + -2.9
2,252,107 - -1.7

Or see this region's nucleotide sequence