Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS11535

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
2,198,551	+	tyrR	LU632_RS11530	0.50	-2.2
2,198,718	+	tyrR	LU632_RS11530	0.61	+0.0
2,198,718	+	tyrR	LU632_RS11530	0.61	+0.7
2,198,843	+	tyrR	LU632_RS11530	0.69	+0.7
2,199,059	-	tyrR	LU632_RS11530	0.82	-1.1
2,199,118	+	tyrR	LU632_RS11530	0.86	+0.7
2,199,155	-	tyrR	LU632_RS11530	0.88	-1.5
2,199,156	+	tyrR	LU632_RS11530	0.89	-0.1
2,199,156	+	tyrR	LU632_RS11530	0.89	-0.2
2,199,218	+				+0.5
2,199,219	-				+3.6
2,199,222	+				-0.2
2,199,320	+				-0.8
2,199,321	-				+0.7
2,199,321	-				+0.4
2,199,336	+				+2.6
2,199,336	+				-0.9
2,199,337	-				+0.6
2,199,337	-				+0.7
2,199,337	-				+0.2
2,199,380	+				-1.2
2,199,381	-				-1.6
2,199,483	+				+0.7
2,199,495	-				-2.1
2,199,675	-		LU632_RS11535	0.24	-0.1
2,199,822	+		LU632_RS11535	0.38	+1.6
2,199,969	-		LU632_RS11535	0.52	-0.5
2,200,262	+		LU632_RS11535	0.80	+2.2
2,200,263	-		LU632_RS11535	0.80	-2.1
2,200,410	+				-0.7
2,200,411	-				-0.4
2,200,444	-				-2.2
2,200,649	-		LU632_RS11540	0.13	-1.9
2,200,684	+		LU632_RS11540	0.16	-0.4
2,200,685	-		LU632_RS11540	0.16	+0.4
2,201,049	+		LU632_RS11540	0.42	-3.3
2,201,076	+		LU632_RS11540	0.44	-0.6
2,201,076	+		LU632_RS11540	0.44	+0.5
2,201,077	-		LU632_RS11540	0.44	+1.9
2,201,079	+		LU632_RS11540	0.44	-0.1
2,201,105	+		LU632_RS11540	0.46	-0.2
2,201,105	+		LU632_RS11540	0.46	-2.3
2,201,105	+		LU632_RS11540	0.46	-0.2
2,201,105	+		LU632_RS11540	0.46	-0.2
2,201,105	+		LU632_RS11540	0.46	+1.4
2,201,105	+		LU632_RS11540	0.46	+0.1
2,201,106	-		LU632_RS11540	0.46	+0.3
2,201,106	-		LU632_RS11540	0.46	+0.0
2,201,106	-		LU632_RS11540	0.46	-0.2
2,201,106	-		LU632_RS11540	0.46	-1.3
2,201,106	-		LU632_RS11540	0.46	-2.2
2,201,107	+		LU632_RS11540	0.46	+0.7
2,201,108	-		LU632_RS11540	0.46	-0.3
2,201,108	-		LU632_RS11540	0.46	-1.7
2,201,180	+		LU632_RS11540	0.51	+0.3
2,201,268	+		LU632_RS11540	0.57	-1.7
2,201,414	-		LU632_RS11540	0.68	-0.0
2,201,418	+		LU632_RS11540	0.68	+0.1