Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pqiB and pqiC overlap by 1 nucleotides pqiC and rmf are separated by 398 nucleotides rmf and fabA are separated by 101 nucleotides
LU632_RS09980: pqiB - intermembrane transport protein PqiB, at 1,909,049 to 1,910,689
pqiB
LU632_RS09985: pqiC - membrane integrity-associated transporter subunit PqiC, at 1,910,689 to 1,911,315
pqiC
LU632_RS09990: rmf - ribosome modulation factor, at 1,911,714 to 1,911,881
rmf
LU632_RS09995: fabA - bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase, at 1,911,983 to 1,912,501
fabA
Position (kb) 1910
1911
1912 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1909.860 kb on + strand, within pqiB at 1909.860 kb on + strand, within pqiB at 1909.861 kb on - strand, within pqiB at 1909.876 kb on + strand, within pqiB at 1909.895 kb on + strand, within pqiB at 1909.895 kb on + strand, within pqiB at 1909.990 kb on + strand, within pqiB at 1909.991 kb on - strand, within pqiB at 1909.991 kb on - strand, within pqiB at 1909.991 kb on - strand, within pqiB at 1910.143 kb on + strand, within pqiB at 1910.144 kb on - strand, within pqiB at 1910.199 kb on - strand, within pqiB at 1910.199 kb on - strand, within pqiB at 1910.330 kb on - strand, within pqiB at 1910.336 kb on - strand, within pqiB at 1910.338 kb on + strand, within pqiB at 1910.350 kb on - strand, within pqiB at 1910.469 kb on + strand, within pqiB at 1910.506 kb on + strand, within pqiB at 1910.543 kb on + strand at 1910.616 kb on + strand at 1910.623 kb on + strand at 1910.687 kb on + strand at 1910.688 kb on - strand at 1910.831 kb on + strand, within pqiC at 1910.838 kb on + strand, within pqiC at 1910.839 kb on - strand, within pqiC at 1910.839 kb on - strand, within pqiC at 1910.895 kb on + strand, within pqiC at 1910.895 kb on + strand, within pqiC at 1910.900 kb on - strand, within pqiC at 1910.916 kb on + strand, within pqiC at 1910.967 kb on + strand, within pqiC at 1911.126 kb on + strand, within pqiC at 1911.127 kb on - strand, within pqiC at 1911.362 kb on - strand at 1911.365 kb on + strand at 1911.366 kb on - strand at 1911.366 kb on - strand at 1911.650 kb on + strand at 1911.651 kb on - strand at 1911.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 1,909,860 + pqiB LU632_RS09980 0.49 -2.3 1,909,860 + pqiB LU632_RS09980 0.49 -0.3 1,909,861 - pqiB LU632_RS09980 0.49 -1.0 1,909,876 + pqiB LU632_RS09980 0.50 -0.4 1,909,895 + pqiB LU632_RS09980 0.52 -2.6 1,909,895 + pqiB LU632_RS09980 0.52 -1.1 1,909,990 + pqiB LU632_RS09980 0.57 +1.8 1,909,991 - pqiB LU632_RS09980 0.57 -4.1 1,909,991 - pqiB LU632_RS09980 0.57 -0.6 1,909,991 - pqiB LU632_RS09980 0.57 +1.4 1,910,143 + pqiB LU632_RS09980 0.67 -2.2 1,910,144 - pqiB LU632_RS09980 0.67 +1.4 1,910,199 - pqiB LU632_RS09980 0.70 +1.1 1,910,199 - pqiB LU632_RS09980 0.70 -0.1 1,910,330 - pqiB LU632_RS09980 0.78 -2.5 1,910,336 - pqiB LU632_RS09980 0.78 +1.8 1,910,338 + pqiB LU632_RS09980 0.79 +0.2 1,910,350 - pqiB LU632_RS09980 0.79 -0.4 1,910,469 + pqiB LU632_RS09980 0.87 -0.7 1,910,506 + pqiB LU632_RS09980 0.89 -0.9 1,910,543 + -1.0 1,910,616 + -1.8 1,910,623 + -2.4 1,910,687 + +0.9 1,910,688 - -1.2 1,910,831 + pqiC LU632_RS09985 0.23 -0.8 1,910,838 + pqiC LU632_RS09985 0.24 -3.9 1,910,839 - pqiC LU632_RS09985 0.24 +0.9 1,910,839 - pqiC LU632_RS09985 0.24 -0.6 1,910,895 + pqiC LU632_RS09985 0.33 -1.9 1,910,895 + pqiC LU632_RS09985 0.33 -3.6 1,910,900 - pqiC LU632_RS09985 0.34 -1.2 1,910,916 + pqiC LU632_RS09985 0.36 -2.4 1,910,967 + pqiC LU632_RS09985 0.44 -0.4 1,911,126 + pqiC LU632_RS09985 0.70 -1.8 1,911,127 - pqiC LU632_RS09985 0.70 -3.5 1,911,362 - -0.9 1,911,365 + -0.7 1,911,366 - +0.2 1,911,366 - +2.5 1,911,650 + -1.1 1,911,651 - +0.6 1,911,909 - -1.6
Or see this region's nucleotide sequence