Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gsiB and gsiC are separated by 62 nucleotides gsiC and gsiD are separated by 9 nucleotides gsiD and LU632_RS09575 are separated by 4 nucleotides LU632_RS09575 and rimO are separated by 168 nucleotides
LU632_RS09560: gsiB - glutathione ABC transporter substrate-binding protein GsiB, at 1,810,102 to 1,811,634
gsiB
LU632_RS09565: gsiC - glutathione ABC transporter permease GsiC, at 1,811,697 to 1,812,617
gsiC
LU632_RS09570: gsiD - glutathione ABC transporter permease GsiD, at 1,812,627 to 1,813,532
gsiD
LU632_RS09575: LU632_RS09575 - DUF4385 domain-containing protein, at 1,813,537 to 1,813,982
_RS09575
LU632_RS09580: rimO - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,814,151 to 1,815,479
rimO
Position (kb) 1812
1813
1814 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 1811.703 kb on - strand at 1811.707 kb on - strand at 1811.712 kb on - strand at 1812.213 kb on + strand, within gsiC at 1812.214 kb on - strand, within gsiC at 1812.215 kb on + strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.216 kb on - strand, within gsiC at 1812.306 kb on + strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.307 kb on - strand, within gsiC at 1812.308 kb on + strand, within gsiC at 1812.309 kb on - strand, within gsiC at 1812.309 kb on - strand, within gsiC at 1812.452 kb on - strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.455 kb on + strand, within gsiC at 1812.456 kb on - strand, within gsiC at 1812.456 kb on - strand, within gsiC at 1812.530 kb on - strand at 1812.552 kb on - strand at 1812.576 kb on - strand at 1812.582 kb on + strand at 1812.583 kb on - strand at 1812.644 kb on + strand at 1812.663 kb on - strand at 1812.897 kb on - strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.910 kb on + strand, within gsiD at 1812.911 kb on - strand, within gsiD at 1813.006 kb on - strand, within gsiD at 1813.006 kb on - strand, within gsiD at 1813.028 kb on + strand, within gsiD at 1813.032 kb on - strand, within gsiD at 1813.116 kb on - strand, within gsiD at 1813.199 kb on + strand, within gsiD at 1813.199 kb on + strand, within gsiD at 1813.200 kb on - strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.203 kb on + strand, within gsiD at 1813.204 kb on - strand, within gsiD at 1813.204 kb on - strand, within gsiD at 1813.205 kb on + strand, within gsiD at 1813.319 kb on + strand, within gsiD at 1813.322 kb on + strand, within gsiD at 1813.479 kb on - strand at 1813.647 kb on + strand, within LU632_RS09575 at 1813.648 kb on - strand, within LU632_RS09575 at 1813.648 kb on - strand, within LU632_RS09575 at 1813.782 kb on + strand, within LU632_RS09575 at 1813.812 kb on + strand, within LU632_RS09575 at 1813.840 kb on - strand, within LU632_RS09575 at 1814.048 kb on + strand at 1814.049 kb on - strand at 1814.112 kb on + strand at 1814.208 kb on + strand at 1814.369 kb on + strand, within rimO at 1814.470 kb on + strand, within rimO at 1814.470 kb on + strand, within rimO
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2) remove 1,811,703 - -0.6 1,811,707 - +0.2 1,811,712 - +0.8 1,812,213 + gsiC LU632_RS09565 0.56 -0.4 1,812,214 - gsiC LU632_RS09565 0.56 -2.6 1,812,215 + gsiC LU632_RS09565 0.56 +3.3 1,812,216 - gsiC LU632_RS09565 0.56 +0.5 1,812,216 - gsiC LU632_RS09565 0.56 -1.2 1,812,216 - gsiC LU632_RS09565 0.56 +0.1 1,812,306 + gsiC LU632_RS09565 0.66 -1.1 1,812,307 - gsiC LU632_RS09565 0.66 +1.2 1,812,307 - gsiC LU632_RS09565 0.66 -3.8 1,812,307 - gsiC LU632_RS09565 0.66 -0.5 1,812,307 - gsiC LU632_RS09565 0.66 -1.0 1,812,308 + gsiC LU632_RS09565 0.66 -0.2 1,812,309 - gsiC LU632_RS09565 0.66 -0.5 1,812,309 - gsiC LU632_RS09565 0.66 -0.7 1,812,452 - gsiC LU632_RS09565 0.82 +2.2 1,812,455 + gsiC LU632_RS09565 0.82 -3.4 1,812,455 + gsiC LU632_RS09565 0.82 -0.2 1,812,455 + gsiC LU632_RS09565 0.82 -1.7 1,812,456 - gsiC LU632_RS09565 0.82 -1.1 1,812,456 - gsiC LU632_RS09565 0.82 -1.1 1,812,530 - +0.9 1,812,552 - -0.3 1,812,576 - -0.9 1,812,582 + -0.9 1,812,583 - -1.1 1,812,644 + -4.2 1,812,663 - -0.9 1,812,897 - gsiD LU632_RS09570 0.30 -3.6 1,812,910 + gsiD LU632_RS09570 0.31 -2.3 1,812,910 + gsiD LU632_RS09570 0.31 +2.4 1,812,910 + gsiD LU632_RS09570 0.31 -0.6 1,812,911 - gsiD LU632_RS09570 0.31 -0.6 1,813,006 - gsiD LU632_RS09570 0.42 -1.8 1,813,006 - gsiD LU632_RS09570 0.42 -0.7 1,813,028 + gsiD LU632_RS09570 0.44 +0.4 1,813,032 - gsiD LU632_RS09570 0.45 -0.9 1,813,116 - gsiD LU632_RS09570 0.54 +0.3 1,813,199 + gsiD LU632_RS09570 0.63 -1.9 1,813,199 + gsiD LU632_RS09570 0.63 +0.6 1,813,200 - gsiD LU632_RS09570 0.63 -0.8 1,813,203 + gsiD LU632_RS09570 0.64 +0.6 1,813,203 + gsiD LU632_RS09570 0.64 +0.2 1,813,203 + gsiD LU632_RS09570 0.64 -0.7 1,813,203 + gsiD LU632_RS09570 0.64 -0.8 1,813,203 + gsiD LU632_RS09570 0.64 -3.5 1,813,203 + gsiD LU632_RS09570 0.64 -0.3 1,813,204 - gsiD LU632_RS09570 0.64 -0.1 1,813,204 - gsiD LU632_RS09570 0.64 -0.2 1,813,205 + gsiD LU632_RS09570 0.64 +1.4 1,813,319 + gsiD LU632_RS09570 0.76 -0.6 1,813,322 + gsiD LU632_RS09570 0.77 -0.6 1,813,479 - -1.9 1,813,647 + LU632_RS09575 0.25 +0.1 1,813,648 - LU632_RS09575 0.25 -0.9 1,813,648 - LU632_RS09575 0.25 -0.7 1,813,782 + LU632_RS09575 0.55 +1.4 1,813,812 + LU632_RS09575 0.62 +0.1 1,813,840 - LU632_RS09575 0.68 +0.6 1,814,048 + -0.3 1,814,049 - +0.0 1,814,112 + +1.8 1,814,208 + -2.1 1,814,369 + rimO LU632_RS09580 0.16 -0.9 1,814,470 + rimO LU632_RS09580 0.24 -1.4 1,814,470 + rimO LU632_RS09580 0.24 +1.1
Or see this region's nucleotide sequence