Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS06885

Experiment: Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE, Melon 5 Petiole 2 (TE-S-M5-P2)
1,321,117	-		LU632_RS06880	0.53	-2.2
1,321,146	+		LU632_RS06880	0.56	+0.6
1,321,146	-		LU632_RS06880	0.56	+0.4
1,321,212	-		LU632_RS06880	0.64	+1.1
1,321,483	-				-2.0
1,321,515	+				-0.5
1,321,516	-				-0.5
1,321,516	-				+0.9
1,321,519	-				-0.3
1,321,521	+				-0.7
1,321,522	-				+0.1
1,321,563	+				+0.4
1,321,563	+				+0.4
1,321,564	-				-0.5
1,321,566	+				-1.1
1,321,567	-				+0.5
1,321,708	+				+3.0
1,321,709	-				+1.9
1,321,814	+				-0.0
1,321,815	-				+0.1
1,321,817	+				-2.5
1,322,079	+				-0.7
1,322,291	+		LU632_RS06885	0.76	-0.9
1,322,295	-		LU632_RS06885	0.77	-1.9
1,322,295	-		LU632_RS06885	0.77	-1.3
1,322,360	+				+0.6
1,322,602	+				-0.7
1,322,637	+				-0.2
1,322,643	+				-1.7
1,322,694	+				-0.4
1,322,694	+				-0.4
1,322,695	-				+0.6
1,322,741	+				-0.4
1,322,741	+				-0.6
1,322,741	+				+1.5
1,322,742	-				-1.0
1,322,742	-				-1.8
1,322,742	-				-1.8
1,322,742	-				-1.2
1,322,742	-				+0.4
1,322,742	-				-0.1
1,322,759	-	tnpA	LU632_RS06895	0.11	-0.3
1,322,765	+	tnpA	LU632_RS06895	0.12	+1.1
1,322,765	+	tnpA	LU632_RS06895	0.12	+0.2
1,322,766	-	tnpA	LU632_RS06895	0.12	-0.3
1,322,836	+	tnpA	LU632_RS06895	0.28	-1.1
1,322,836	+	tnpA	LU632_RS06895	0.28	-0.5
1,322,836	+	tnpA	LU632_RS06895	0.28	+0.4
1,322,836	+	tnpA	LU632_RS06895	0.28	+0.5
1,322,837	-	tnpA	LU632_RS06895	0.29	+2.5
1,322,837	-	tnpA	LU632_RS06895	0.29	-2.2
1,322,837	-	tnpA	LU632_RS06895	0.29	-0.3
1,322,876	+	tnpA	LU632_RS06895	0.37	+1.1
1,322,897	+	tnpA	LU632_RS06895	0.42	-0.6
1,322,999	+	tnpA	LU632_RS06895	0.66	+0.5
1,323,012	-	tnpA	LU632_RS06895	0.69	-1.5
1,323,085	+	tnpA	LU632_RS06895	0.86	-2.8
1,323,086	-	tnpA	LU632_RS06895	0.86	-0.3
1,323,140	+				-0.8
1,323,141	-				-0.1
1,323,146	-				-1.3
1,323,160	-				-0.5
1,323,175	+				+1.7
1,323,204	+				+1.1
1,323,204	+				-0.8
1,323,205	-				+0.7
1,323,205	-				+0.6
1,323,220	+				+0.3
1,323,226	-				+2.2
1,323,268	+				+0.5
1,323,269	-				+3.1